# Difference: HipeWhatsNew5x (1 vs. 66)

#### Revision 662012-10-30 - DavideRizzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"
<-- ANALYTICS CODE - DO NOT EDIT -->
<-- Google Analytics script BEGIN -->
<-- Google Analytics script END -->
Line: 7 to 7

>
>
 Interested in what's new for other versions of HIPE? See this page for links to all the What's New documents from HIPE 4.0 onwards.
This document lists the changes in HIPE version 5.0 with respect to the 4.x series. Additional pages list changes between minor versions of the 5.x series.

#### Revision 652012-10-19 - DavideRizzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"
>
>
<-- ANALYTICS CODE - DO NOT EDIT -->
<-- Google Analytics script BEGIN -->
<-- Google Analytics script END -->

<-- END OF ANALYTICS CODE -->

# What's New in HIPE 5

Line: 838 to 841

-->
Changed:
<
<
 META FILEATTACHMENT attachment="toolbox.gif" attr="" comment="New spectrum toolbox icon" date="1292538464" name="toolbox.gif" path="toolbox.gif" size="973" stream="toolbox.gif" user="Main.CarolynMcCoey" version="1"
>
>
 META FILEATTACHMENT attr="" autoattached="1" comment="New spectrum toolbox icon" date="1292538464" name="toolbox.gif" path="toolbox.gif" size="973" user="Main.CarolynMcCoey" version="1" attr="h" autoattached="1" comment="Script for Google Analytics" date="1350656328" name="GoogleAnalytics.txt" path="GoogleAnalytics.txt" size="549" user="Main.DavideRizzo" version="1"

#### Revision 642012-05-14 - DavideRizzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

Line: 660 to 660
Other small changes:
• getCalTree(), getCalProduct() now understand the 'verbose=True' keyword and will print information on the location of the calibration products.
• getCalProduct() the third argument, 'version', is no longer mandatory, if not given, the last version of the calibration product will be returned.
Changed:
<
<
• A new Pacs Documentation page has been opened on the public wiki.
>
>

#### Photometry

Line: 817 to 817

• Changed SpecExplorer's detector display so that it automatically re-sizes to fit the enclosing frame. Also, SpecExplorer's detectors are now enclosed in a splitter pane. This enables you to maximize or hide the detector display with a single click.
• A new SpireMultiObs task to process several observations through the pipeline at once.
>
>

<-- COMMENT BOX CODE - DO NOT EDIT -->
<-- END OF COMMENT BOX CODE -->

<--
-->

#### Revision 632011-02-23 - DavideRizzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

Line: 8 to 8

>
>
See also the HIPE known issues and the Data products known issues pages for last-minute information on known problems.

#### Revision 622011-02-07 - DavideRizzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

Deleted:
<
<
See also the HIPE known issues and the Data products known issues pages for last-minute information on known problems.

This document lists the changes in HIPE version 5.0 with respect to the 4.x series. Additional pages list changes between minor versions of the 5.x series.

>
>

See also the HIPE known issues and the Data products known issues pages for last-minute information on known problems.

## Core system

#### Revision 612011-01-11 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

#### Revision 602011-01-11 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

Line: 100 to 100

• Added relativistic frequency to velocity transform: When changing the unit of the wave axis to velocity the transform is now relativistic.

#### Analysis

• Gaussian resampling introduced.
>
>

### Herschel Science Archive

• Support for exporting data in packed HSA format.

#### Revision 592011-01-10 - KevinEdwards

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

Line: 559 to 559

• hifiPipeline will make an ObservationContext even if creation of trend products fails
• hifiPipeline GUI layout improved to make more efficient use of space
>
>
• When reprocessing with the hifiPipeline task it is not recommend to set aux=True when using the HSA to retrieve your data as not all Auxiliary data products will be updated correctly. The default option of aux=False is valid for all observations created with SPG v4.0+ (which should be all HIFI observations in the HSA).

#### Level 0 Pipeline

• H and V spectrometer astrometry

#### Revision 582010-12-21 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

Line: 269 to 269

 Aperture Efficiency (H) Band Frequency (GHz) Eta_A
Changed:
<
<
 1a 491 0.692 1b 610 0.693 2a 648 0.689 2b 770 0.678 3a 828 0.665 3b 948 0.676 4a 1012 0.664 4b 1112 0.695 5a 1127 0.618 5b 1243 0.561 6a 1483 0.663 6b 1625 0.642 7a 1703 0.613 7b 1807 0.627 7b 1893 0.604
>
>
 1a 489 0.676 1a 512 0.675 1a 548 0.675 1b 564 0.675 1b 595 0.674 1b 627 0.673 2a 641 0.673 2a 677 0.672 2a 710 0.671 2b 724 0.671 2b 756 0.67 2b 792 0.669 3a 809 0.669 3a 830 0.668 3a 850 0.668 3b 868 0.667 3b 910 0.666 3b 945 0.665 4a 959 0.664 4a 1006 0.663 4a 1052 0.661 4b 1064 0.661 4b 1086 0.66 4b 1112 0.659 5a 1118 0.562 5a 1179 0.56 5a 1240 0.558 5b 1148 0.561 5b 1207 0.559 5b 1268 0.557 6a 1431 0.646 6a 1503 0.642 6a 1574 0.639 6b 1579 0.638 6b 1637 0.635 6b 1694 0.632 7a 1708 0.631 7a 1768 0.628 7a 1813 0.626 7b 1720 0.631 7b 1815 0.625 7b 1897 0.621

 Aperture Efficiency (V) Band Frequency (GHz) Eta_A
Changed:
<
<
 1a 491 0.656 1b 610 0.668 2a 648 0.706 2b 770 0.694 3a 828 0.725 3b 948 0.734 4a 1012 0.724 4b 1112 0.744 5a 1127 0.588 5b 1243 0.588 6a 1483 0.675 6b 1625 0.597 7a 1703 0.582 7b 1807 0.65 7b 1893 0.674
>
>
 1a 489 0.676 1a 512 0.675 1a 548 0.675 1b 564 0.675 1b 595 0.674 1b 627 0.673 2a 641 0.673 2a 677 0.672 2a 710 0.671 2b 724 0.671 2b 756 0.67 2b 792 0.669 3a 809 0.669 3a 830 0.668 3a 850 0.668 3b 868 0.667 3b 910 0.666 3b 945 0.665 4a 959 0.664 4a 1006 0.663 4a 1052 0.661 4b 1064 0.661 4b 1086 0.66 4b 1112 0.659 5a 1118 0.562 5a 1179 0.56 5a 1240 0.558 5b 1148 0.561 5b 1207 0.559 5b 1268 0.557 6a 1431 0.646 6a 1503 0.642 6a 1574 0.639 6b 1579 0.638 6b 1637 0.635 6b 1694 0.632 7a 1708 0.631 7a 1768 0.628 7a 1813 0.626 7b 1720 0.631 7b 1815 0.625 7b 1897 0.621

 Beam Efficiency (H) Band frequency (GHz) eta_mb
Changed:
<
<
 1a 491 0.719 1b 610 0.708 2a 648 0.752 2b 770 0.719 3a 828 0.716 3b 948 0.739 4a 1012 0.712 4b 1112 0.764 5a 1127 0.682 5b 1243 0.677 6a 1483 0.707 6b 1625 0.691 7a 1703 0.62 7b 1807 0.664 7b 1893 0.65
>
>
 1a 489 0.755 1a 512 0.755 1a 548 0.754 1b 564 0.754 1b 595 0.753 1b 627 0.752 2a 641 0.752 2a 677 0.751 2a 710 0.75 2b 724 0.75 2b 756 0.749 2b 792 0.748 3a 809 0.747 3a 830 0.747 3a 850 0.746 3b 868 0.746 3b 910 0.744 3b 945 0.743 4a 959 0.742 4a 1006 0.741 4a 1052 0.739 4b 1064 0.738 4b 1086 0.738 4b 1112 0.737 5a 1118 0.639 5a 1179 0.637 5a 1240 0.635 5b 1148 0.638 5b 1207 0.636 5b 1268 0.634 6a 1431 0.722 6a 1503 0.718 6a 1574 0.714 6b 1579 0.713 6b 1637 0.71 6b 1694 0.707 7a 1708 0.706 7a 1768 0.702 7a 1813 0.699 7b 1720 0.705 7b 1815 0.699 7b 1897 0.694

 Beam Efficiency (V) Band Frequency (GHz) eta_mb
Changed:
<
<
 1a 491 0.71 1b 610 0.73 2a 648 0.767 2b 770 0.739 3a 828 0.716 3b 948 0.74 4a 1012 0.697 4b 1112 0.747 5a 1127 0.705 5b 1243 0.721 6a 1483 0.738 6b 1625 0.652 7a 1703 0.72 7b 1807 0.747 7b 1893 0.716
>
>
 1a 489 0.755 1a 512 0.755 1a 548 0.754 1b 564 0.754 1b 595 0.753 1b 627 0.752 2a 641 0.752 2a 677 0.751 2a 710 0.75 2b 724 0.75 2b 756 0.749 2b 792 0.748 3a 809 0.747 3a 830 0.747 3a 850 0.746 3b 868 0.746 3b 910 0.744 3b 945 0.743 4a 959 0.742 4a 1006 0.741 4a 1052 0.739 4b 1064 0.738 4b 1086 0.738 4b 1112 0.737 5a 1118 0.639 5a 1179 0.637 5a 1240 0.635 5b 1148 0.638 5b 1207 0.636 5b 1268 0.634 6a 1431 0.722 6a 1503 0.718 6a 1574 0.714 6b 1579 0.713 6b 1637 0.71 6b 1694 0.707 7a 1708 0.706 7a 1768 0.702 7a 1813 0.699 7b 1720 0.705 7b 1815 0.699 7b 1897 0.694

 Beam Widths (H) Band Frequency (GHz) HPBW
Changed:
<
<
 1a 491 43.2215 1b 610 34.491 2a 648 33.5467 2b 770 27.8307 3a 828 26.0713 3b 948 22.9548 4a 1012 21.2963 4b 1112 19.6236 5a 1127 19.3848 5b 1243 18.3857 6a 1483 14.4887 6b 1625 13.2943 7a 1703 12.2893 7b 1807 11.837 7b 1893 11.3947
>
>
 1a 489 43.362 1a 512 41.414 1a 548 38.694 1b 564 37.596 1b 595 35.637 1b 627 33.818 2a 641 33.08 2a 677 31.321 2a 710 29.865 2b 724 29.287 2b 756 28.048 2b 792 26.773 3a 809 26.21 3a 830 25.547 3a 850 24.946 3b 868 24.429 3b 910 23.301 3b 945 22.438 4a 959 22.111 4a 1006 21.078 4a 1052 20.156 4b 1064 19.929 4b 1086 19.525 4b 1112 19.068 5a 1118 18.966 5a 1179 17.985 5a 1240 17.1 5b 1148 18.47 5b 1207 17.568 5b 1268 16.722 6a 1431 14.818 6a 1503 14.108 6a 1574 13.471 6b 1579 13.429 6b 1637 12.953 6b 1694 12.517 7a 1708 12.415 7a 1768 11.993 7a 1813 11.696 7b 1720 12.328 7b 1815 11.683 7b 1897 11.178

 Beam Widths (V) Band Frequency (GHz) HPBW
Changed:
<
<
 1a 491 44.3046 1b 610 35.6647 2a 648 33.4792 2b 770 27.8911 3a 828 24.9809 3b 948 22.0368 4a 1012 20.1616 4b 1112 18.744 5a 1127 20.2139 5b 1243 18.5472 6a 1483 14.6695 6b 1625 13.3874 7a 1703 13.5974 7b 1807 12.3413 7b 1893 11.3242

Note these are still initial results, measurements from ODs 390, 391, 406 and 407 still need to be added. One can use the developer part of calibration tree, where newer values will be tested first, by setting the following property: Configuration.setProperty("hcss.ia.obs.cal.release", "developer")

>
>
 1a 489 43.362 1a 512 41.414 1a 548 38.694 1b 564 37.596 1b 595 35.637 1b 627 33.818 2a 641 33.08 2a 677 31.321 2a 710 29.865 2b 724 29.287 2b 756 28.048 2b 792 26.773 3a 809 26.21 3a 830 25.547 3a 850 24.946 3b 868 24.429 3b 910 23.301 3b 945 22.438 4a 959 22.111 4a 1006 21.078 4a 1052 20.156 4b 1064 19.929 4b 1086 19.525 4b 1112 19.068 5a 1118 18.966 5a 1179 17.985 5a 1240 17.1 5b 1148 18.47 5b 1207 17.568 5b 1268 16.722 6a 1431 14.818 6a 1503 14.108 6a 1574 13.471 6b 1579 13.429 6b 1637 12.953 6b 1694 12.517 7a 1708 12.415 7a 1768 11.993 7a 1813 11.696 7b 1720 12.328 7b 1815 11.683 7b 1897 11.178

Line: 424 to 584

### HIFI Data Processing Tools

• PolarPairs now has a tolerance of 100. Previously it as 5 and this sometimes caused the task to fail resulting in the output being identical to the first input product.
>
>
• A task to allow conversion of Kelvin to Jansky, ConverK2Jy, is introduced

#### Standing Wave Removal

Line: 438 to 599

• Introduction of a new task, FitBaseline, to interactively fit and subtract or divide out baselines in HIFI spectra.
• A bug that appeared in early versions of HIPE 5 where domask=2 in did not work in FitBaseline (preventing automatic line masking) now fixed.
• A bug that appeared in early versions of HIPE 5 in which fitBaseline would not save on an intermediate quit is resolved.
>
>
• The fitting routine in fitBaseline has a condition set such that no polynomials of order n are fitted if less than n+1 channels are available. This prevents crashes of the task in the case of heavily flagged data.

#### Deconvolution

Line: 449 to 611

• HiClass will now appear an an applicable task for HTP as well as ObservationContexts
• HiClass now exports the correct frequencies for bands 6 and 7
Changed:
<
<
• Bug that appeared in early versions of HIPE 5 preventing export of Spectral Scans now fixed
>
>
• A bug that appeared in early versions of HIPE 5 preventing export of Spectral Scans now fixed
• HiClass now exports the source velocity as provided by the astronomer in the AOR into a new FITS header keyword. At this time, the CLASS software will not do anything with this information, but the requirement to provide ALL the information is satisfied by having the velocity information present in the FITS header somewhere. The keywords used, which are slightly different than the usual ones used to reflect the fact that only the velocity in the proposal is exported, are tabulated below.

 reference frame usual keyword proposed keyword topocentric VELO-OBS PVEL-OBS geocentric VELO-GEO PVEL-GEO heliocentric VELO-HEL PVEL-HEL LSRk VELO-LSR PVEL-LSR LSRd VELO-LSR PVEL-LSR LSR VELO-LSR PVEL-LSR galactocentric VELO-GAL PVEL-GAL source VELOREST PVELREST unknown VELOCITY PVELCITY

These keyword takes care of the value, the unit and the reference frame. The PVELTYPE keyword will identify the type of 'velocity' (velocity, redshift, radio or optical convention).

### HIFI Documentation

• New chapters in the HIFI User's Manual: What was done to my data? and HIFI Baseline Removal.
Changed:
<
<
• Updates to the HIFI Users Manual: HIFI cookbook, Data Primer, Running the HIFI Pipeline, HIFI Standing Wave Removal Tool and Exporting HIFI data to CLASS.
>
>
• Updates to the HIFI Users Manual: HIFI cookbook, Data Primer, Running the HIFI Pipeline, HIFI Standing Wave Removal Tool , How to make Spectral Cubes and Exporting HIFI data to CLASS.

• Updates to HIFI Pipeline Specification document: improved pipeline flow diagrams, improved information about Euler resampling used in DoFreq grid task of pipeline.
• Creation of FitHifiFringe URM entry.
• The HIFI cookbook can now be selected from the Help menu in the HIPE toolbar under Help -> Data Reduction -> HIFI

#### Revision 572010-12-16 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

Line: 53 to 53

### Numeric routines

#### Data fitting

Changed:
<
<
• A complete new GUI for the SpectrumFitter was added. Start it from the SpectrumExplorer right mouse menu, select SpectrumFitterGUI. Besides the functionality that was available in the SpectrumFitterTool, the GUI has an export tab that enables you to export the residual, total model, and individual models as an object with the type of the input object and as text.
>
>
• A complete new GUI for the SpectrumFitter was added. Start it from the spectrum toolbox menu, select SpectrumFitterGUI. Besides the functionality that was available in the SpectrumFitterTool, the GUI has an export tab that enables you to export the residual, total model, and individual models as an object with the type of the input object and as text.

• The SpectrumFitter (commandline version) accepts Container with PointSpectrum and SpectralSegment index.
• The SpectrumFitter (commandline version) has methods to export the data as the input type and as text.
• The SpectrumFitter (commandline version) has method that returns a Jython script.
Line: 92 to 92

### Spectra

#### Display

• Task & Tools Toolbox: All task and tool panels are displayed in the same toolbox panel and selectable through a drop-down list. The task GUI components have become clearer as well.
Changed:
<
<
Instead of dragging a selection of spectra to the dataset parameter, the task is applied on either the displayed or the selected spectra within the plot.
>
>
• The new spectrum toolbox panel is opened by clicking on in the toolbar
• Instead of dragging a selection of spectra to the dataset parameter, the task is applied on either the displayed or the selected spectra within the plot.

• Load selectable datasets from a product: When opening the spectrum explorer on a product, a selection table is displayed showing all datasets that are stored in this product along with certain characteristics. Just as within the original spectrum selection panel, these datasets can be sorted by clicking on the header columns. To load a set of datasets instead of just one or all, select each row and right click to load the selected datasets.
• Realtime statistics information: Selecting the Statistics task within the Toolbox displays realtime statistics while dragging ranges in the plot.
Line: 410 to 411

#### Level 2 Pipeline

• DoMainBeamTemp now multiplies by the forward efficiency. In earlier versions of HIPE this was not an issue because a value of Feff=1 was assumed. This update was required as a consequence of the adoption of Feff=0.96 in the calibration tree.
>
>
• The ra and dec in cube meta data is now set to be the centre of the cube. Previously the ra and dec in the first dataset of the HTP had been used.

### HIFI Products

• Modifications to HifiSpectrumDatasets are now reflected in SpectrumExplorer when the HTP is viewed there.
>
>
• It is now possible to create a SimpleSpectrum from a HIFI product or dataset containing only one spectrum. A SimpleSpectrum is easily written to FITS and maintains metadata. The conversion is done as:
simpleSpectrum = convertSingleHifiSpectrum(spectra=data)

Deleted:
<
<

>
>

### HIFI Data Processing Tools

• PolarPairs now has a tolerance of 100. Previously it as 5 and this sometimes caused the task to fail resulting in the output being identical to the first input product.

Line: 430 to 436

#### Baseline removal

• Introduction of a new task, FitBaseline, to interactively fit and subtract or divide out baselines in HIFI spectra.
Changed:
<
<
• Bug that appeared in early versions of HIPE 5 where domask=2 in did not work in FitBaseline (preventing automatic line masking) now fixed.
>
>
• A bug that appeared in early versions of HIPE 5 where domask=2 in did not work in FitBaseline (preventing automatic line masking) now fixed.
• A bug that appeared in early versions of HIPE 5 in which fitBaseline would not save on an intermediate quit is resolved.

#### Deconvolution

Line: 450 to 457

• Updates to the HIFI Users Manual: HIFI cookbook, Data Primer, Running the HIFI Pipeline, HIFI Standing Wave Removal Tool and Exporting HIFI data to CLASS.
• Updates to HIFI Pipeline Specification document: improved pipeline flow diagrams, improved information about Euler resampling used in DoFreq grid task of pipeline.
• Creation of FitHifiFringe URM entry.
>
>
• The HIFI cookbook can now be selected from the Help menu in the HIPE toolbar under Help -> Data Reduction -> HIFI

## PACS

Line: 631 to 639

<--
-->
\ No newline at end of file
>
>
 META FILEATTACHMENT attachment="toolbox.gif" attr="" comment="New spectrum toolbox icon" date="1292538464" name="toolbox.gif" path="toolbox.gif" size="973" stream="toolbox.gif" user="Main.CarolynMcCoey" version="1"

#### Revision 562010-12-15 - DavideRizzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

Line: 8 to 8

>
>
This document lists the changes in HIPE version 5.0 with respect to the 4.x series. Additional pages list changes between minor versions of the 5.x series.

## Core system

### HIPE

#### Revision 552010-12-01 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

Line: 232 to 232

• Unnecessary and deprecated properties files have been removed from the system

### HIFI Calibration

>
>
• The Spur table has been updated to reflect the improvements in band 1a. For data taken after OD 516 the spur table now only shows three entries:
• 1a 537500.00 3000.0 LO_settling 1,2,3,4
• 1a 540929.25 1000.0 Strong_spur 1
• 1a 542306.25 1000.0 Weak_spur 1

• The minimum and maximum chopper threshold values have been changed.
• HkThresholdsContext_H fpuChopperMin -> -0.04
• HkThresholdsContext_V fpuChopperMin -> -0.04
Line: 370 to 375
Note these are still initial results, measurements from ODs 390, 391, 406 and 407 still need to be added. One can use the developer part of calibration tree, where newer values will be tested first, by setting the following property: Configuration.setProperty("hcss.ia.obs.cal.release", "developer")
Deleted:
<
<

### Level 0 Pipeline

• H and V spectrometer astrometry
SpectrumDatasets contain columns, in decimal degrees, for the commanded pointing (a position between the H and V beams known as the synthesized aperture), labelled longitude_cmd and latitude_cmd, while the actual coordinates for the spectrometer beam are found in the longitude and latitude columns.
• DoPointing no longer fails when reapplied

### WBS Pipeline

Deleted:
<
<
• Fixes for frequency calibration in the case that line centres fall precisely in the middle of two pixels

Changed:
<
<

>
>

### HIFI Pipeline

• The path/filename for a user defined/edited pipeline algorithm can now be passed to the hifiPipeline task via the command line, previously this was only possible in the GUI.
Line: 396 to 394

• hifiPipeline will make an ObservationContext even if creation of trend products fails
• hifiPipeline GUI layout improved to make more efficient use of space
Changed:
<
<

### DoDeconvolution

>
>

#### Level 0 Pipeline

Changed:
<
<
• More understandable error message when deconvolution fails (usual due to poor data input).
• Plotting of DSB solution as deconvolutions runs now possible when diag_mode_on selected.
>
>
• H and V spectrometer astrometry
SpectrumDatasets contain columns, in decimal degrees, for the commanded pointing (a position between the H and V beams known as the synthesized aperture), labelled longitude_cmd and latitude_cmd, while the actual coordinates for the spectrometer beam are found in the longitude and latitude columns. Note that HIPE 5 RC 9 and later versions only should be used for this.

#### WBS Pipeline

• Fixes for frequency calibration in the case that line centres fall precisely in the middle of two pixels

#### Level 2 Pipeline

• DoMainBeamTemp now multiplies by the forward efficiency. In earlier versions of HIPE this was not an issue because a value of Feff=1 was assumed. This update was required as a consequence of the adoption of Feff=0.96 in the calibration tree.

### HIFI Products

• Modifications to HifiSpectrumDatasets are now reflected in SpectrumExplorer when the HTP is viewed there.

Changed:
<
<

>
>

### HIFI Data Processing Tools

#### Standing Wave Removal

• It is now possible to remove the smoothed baseline calculated by FitHifiFringe from the spectrum, in addition to the fitted sine waves. This option (sub_base) should be used with care as real spectral features can be removed this way. For interactive fitting of polynomial baselines, the new task FitBaseline is recommended.
Changed:
<
<
• Tooltips implemented
• Improved error messaging
>
>
• Tooltips implemented in the FitHifiFringe GUI
• Improved error messaging from FitHifiFringe
• Bug that appeared in early versions of HIPE 5 where usermask max/min boxes in FitHifiFringe GUI disappeared fixed.

• A Deep Fourier Transform (DFT) module is available (not a part of FitHifiFringe)

#### Baseline removal

• Introduction of a new task, FitBaseline, to interactively fit and subtract or divide out baselines in HIFI spectra.
• Bug that appeared in early versions of HIPE 5 where domask=2 in did not work in FitBaseline (preventing automatic line masking) now fixed.

#### Deconvolution

• More understandable error message when deconvolution fails (usual due to poor data input).
• Plotting of DSB solution as deconvolutions runs now possible when diag_mode_on selected.

### HiClass export tool

• HiClass will now appear an an applicable task for HTP as well as ObservationContexts
• HiClass now exports the correct frequencies for bands 6 and 7
>
>
• Bug that appeared in early versions of HIPE 5 preventing export of Spectral Scans now fixed

Changed:
<
<

### HIFI DP scripts (User tool scripts)

• Introduction of a new task, FitBaseline, to interactively fit and subtract or divide out baselines in HIFI spectra.

>
>

### HIFI Documentation

• New chapters in the HIFI User's Manual: What was done to my data? and HIFI Baseline Removal.
• Updates to the HIFI Users Manual: HIFI cookbook, Data Primer, Running the HIFI Pipeline, HIFI Standing Wave Removal Tool and Exporting HIFI data to CLASS.

#### Revision 542010-12-01 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

Line: 410 to 410

### HiClass export tool

• HiClass will now appear an an applicable task for HTP as well as ObservationContexts
>
>
• HiClass now exports the correct frequencies for bands 6 and 7

### HIFI DP scripts (User tool scripts)

#### Revision 532010-11-25 - DavideRizzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5

>
>
See also the HIPE known issues and the Data products known issues pages for last-minute information on known problems.

## Core system

#### Revision 522010-11-22 - DavideRizzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"
Changed:
<
<

>
>

# What's New in HIPE 5

Line: 40 to 40

• Title and label can now accept the LaTeX commands \textrm \textit \textbf \mathrm \mathit \mathbf. For example: V$_{\textrm{LSR}}$
Deleted:
<
<

### Astronomical utilities

• RadialVelocity now uses TimeCorrProduct to select pointing data.
• SSO now uses TimeCorrProduct to select pointing data.
Line: 70 to 66

• Covariance, which returns the covariance between two random variables/vectors x and y with finite second moments. If one vector is longer than the other, only the values up to the length of the shorter vector will be taken into account.
• CovarianceMatrix, which returns the covariance matrix of the input M x N matrix. The result is a N x N matrix with each i, j value equal to the covariance of the ith and jth columns of the original matrix.
Deleted:
<
<

#### Other functions

• SigClip
• Median mode uses median absolute deviation instead of standard deviation.
Line: 100 to 94

#### Analysis

• Gaussian resampling introduced.
Deleted:
<
<

### Herschel Science Archive

• Support for exporting data in packed HSA format.
• Import and Export Views improvements:
Line: 207 to 197

Deleted:
<
<

### Installer

There was a major restructuring of the pre-installation steps:
• The Basic/Advanced selection page has been removed.
Line: 386 to 374
SpectrumDatasets contain columns, in decimal degrees, for the commanded pointing (a position between the H and V beams known as the synthesized aperture), labelled longitude_cmd and latitude_cmd, while the actual coordinates for the spectrometer beam are found in the longitude and latitude columns.
• DoPointing no longer fails when reapplied
Deleted:
<
<

### WBS Pipeline

• Fixes for frequency calibration in the case that line centres fall precisely in the middle of two pixels
Deleted:
<
<

### Level 2 Pipeline

• The path/filename for a user defined/edited pipeline algorithm can now be passed to the hifiPipeline task via the command line, previously this was only possible in the GUI.
Line: 412 to 394

• hifiPipeline will make an ObservationContext even if creation of trend products fails
• hifiPipeline GUI layout improved to make more efficient use of space
Deleted:
<
<

### DoDeconvolution

• More understandable error message when deconvolution fails (usual due to poor data input).
• Plotting of DSB solution as deconvolutions runs now possible when diag_mode_on selected.
Deleted:
<
<

### FitHifiFringe

• It is now possible to remove the smoothed baseline calculated by FitHifiFringe from the spectrum, in addition to the fitted sine waves. This option (sub_base) should be used with care as real spectral features can be removed this way. For interactive fitting of polynomial baselines, the new task FitBaseline is recommended.
Line: 431 to 409

• HiClass will now appear an an applicable task for HTP as well as ObservationContexts
Deleted:
<
<

### HIFI DP scripts (User tool scripts)

• Introduction of a new task, FitBaseline, to interactively fit and subtract or divide out baselines in HIFI spectra.
Line: 446 to 420

• Updates to HIFI Pipeline Specification document: improved pipeline flow diagrams, improved information about Euler resampling used in DoFreq grid task of pipeline.
• Creation of FitHifiFringe URM entry.
Deleted:
<
<

## PACS

Line: 548 to 520

### Analysis tools

Deleted:
<
<

#### Spectrometry

• Compatibility of PACS products with HCSS tools improved: you can now properly select data points and use the fitter tool on PACS frames and cubes.
Deleted:
<
<

## SPIRE

### Calibration Products

Line: 590 to 552

• Updated to match the new products and dependencies.
• The spireCal task now has an option to read from a local pool.
Deleted:
<
<

### Common Pipeline

• Minor changes in logs and documentation.
Line: 639 to 597

• Changed SpecExplorer's detector display so that it automatically re-sizes to fit the enclosing frame. Also, SpecExplorer's detectors are now enclosed in a splitter pane. This enables you to maximize or hide the detector display with a single click.
• A new SpireMultiObs task to process several observations through the pipeline at once.
Deleted:
<
<

### Other

<--
-->

#### Revision 512010-11-16 - DavideRizzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 131 to 131

#### Observation context

Changed:
<
<
• Include new metadata slewTime returning the scheduled start time of the slew as a FineTime.
>
>
• Included new metadata slewTime returning the scheduled start time of the slew as a FineTime.

• Specific accessors, getSlewStartTime() and setSlewStartTime(), where added to the ObservationContext class.
• For old observations in the HSA without this value, the method will return a null value indicating that this field was never set before.

#### History

Changed:
<
<
A new history dataset viewer is available: When you click on the History dataset in your product then two tables appear above another:
>
>
A new history dataset viewer is available: When you click on the History dataset in your product two tables appear:

• An overview table which shows all the tasks used to generate the product. For each task, the name, execution time, build number and used calibration files are shown.
• When you click on a row in this overview table then a second table is shown with details for the selected task. This table contains the details of this task: For each parameter its simple value and some product information is shown (when available).
Line: 145 to 145

#### Cache

Changed:
<
<
Several bugfixes to improve the effectiveness of caching and the robustness has been introduced. One of these is a check to verify that the default LocalStore directory is not modified at any time during the cache's existence, which is a common source of corruption of the cache.
>
>
Several bugfixes to improve the effectiveness and robustness of caching have been introduced. One of these is a check to verify that the default LocalStore directory is not modified at any time during the cache's existence, which is a common source of corruption of the cache.

#### HsaPool

• HsaReadPool/HsaXmlPool can work with compressed data.
Line: 156 to 156
Product storages and pools can be managed in the new Data Access > Storages & Pools preferences panel.

Changed:
<
<
>
>

• Updated documentation:
Changed:
<
<
• wiki chapters
>
>
• Wiki chapters

Changed:
<
<
• Standardised _ doc _ of general tasks (signature, description, parameter descriptions)
>
>
• Standardised __ doc __ of general tasks (signature, description, parameter descriptions)

• Examples of general tasks in the URM are now tested automatically
Changed:
<
<
• Compress and Decompress tasks: they support zip, tar, gzip, tgz in a portable way and decompress can guess the compression of a file.
>
>
• Compress and Decompress tasks: they support zip, tar, gzip, tgz in a portable way. Decompress can guess the compression of a file.

• FitsReader supports compressed FITS files.

### Quality control

Line: 173 to 173

FITS keyword
<-- -->
Value
PCAVEATS Please refer to http://herschel.esac.esa.int/DpKnownIssues.shtml for known problems in products
Changed:
<
<
• Perform bulk actions on several quality control reports simultaneously
• Flags colour codes depending on their importance
>
>
• Perform bulk actions on several quality control reports simultaneously.
• Flags colour codes depending on their importance.

### Systematic product generation

Changed:
<
<
• New framework to process/combine data from several observations in the same pipeline
• This will allow, for instances, better results using MADmap algorithm with cross-scan data from two or more observations
>
>
• New framework to process/combine data from several observations in the same pipeline.
• This will allow, for instances, better results using MADmap algorithm with cross-scan data from two or more observations.

• Automatic processing:
Changed:
<
<
• New start-time algorithm based on the DTCP time of the OD being processed instead of fixed timestamps
• New check on TM data based on the gap checker reports. Only those observations with complete tm data will be processed at this point
>
>
• New start-time algorithm based on the DTCP time of the OD being processed instead of fixed timestamps.
• New check on TM data based on the gap checker reports. Only those observations with complete tm data will be processed at this point.

• Uplink plugin is executed without problems in different conditions, even for manual commanding and no uplink data at all.
Changed:
<
<
• Obsids shown also in decimal format in all the application tables
• Include proper motion data into the ObservationContext
• SPG stand-alone application can now run on MAC O.S. with no versant libraries available.
• On-demand request are now recorded into a report file
>
>
• Obsids shown also in decimal format in all the application tables.
• Include proper motion data into the ObservationContext.
• SPG stand-alone application can now run on Mac OS with no Versant libraries available.
• On-demand request are now recorded into a report file.

### Data input-output

Changed:
<
<
• Imporved error reporting in AsciiTableTool
• FitsArchive
>
>
• Improved error reporting in AsciiTableTool.
• FitsArchive:

• ESO Hierarch keyword implemented when reading FITS files.
• FITS translation dictionary updated:
Line: 206 to 206

Deleted:
<
<
• JExamples automatic testing support.

### Installer

Changed:
<
<
There was a major restructuring of the pre-installation steps
• The Basic/Advance selection page has been removed.
• The memory, proxy and versant settings were restructured. There are no separate panels asking if the user wants to set a proxy or a versant. There is a dedicated page for the proxy setting and one for the versant settings. In the top of the panel there is the question with a check box. Then there are the text fields not editable by default which will become editable upon user action on the above check box.
• Instead of the old instrument selection page, the user will now be offered the following list with check boxes for selection:
>
>
There was a major restructuring of the pre-installation steps:
• The Basic/Advanced selection page has been removed.
• The memory, proxy and Versant settings were restructured. There are no separate panels asking if you want to set a proxy or a Versant database. There is a dedicated page for the proxy setting and one for the Versant settings.
• Instead of the old instrument selection page, you are now offered the following list with check boxes for selection:

 Option Description PACS (preselected by default) PACS pipelines and analysis tools for astronomers. PACS expert Extra instrument-related applications for Calibration Scientists.
Line: 224 to 222

 HIFI (preselected by default) HIFI pipelines and analysis tools for astronomers. HIFI expert Extra instrument-related applications for Calibration Scientists.
Changed:
<
<
• The instrument selection window should allow to click in any combination of items to install those components.
• It should also allow the deselection of all instruments to get HIPE framework only for FITS i/o and numerics analysis.
• If possible, the installer should inform the user of the amount of data to download for the selected combination of modules.
• The Proxy selection page should contain the Yes/No button and the entry fields, which are kept in grey until "Yes" is selected. The default is kept to "No".
• The Versant selection page should contain the Yes/No button and the entry fields, which are kept in grey until "Yes" is selected. The default is kept to "No".
• The rest of the pages should stay as they are.
>
>
• The instrument selection window allows you to click in any combination of items to install those components.
• You can also deselect all the instruments to get a barebone HIPE framework only for FITS I/O and numeric analysis.
• If possible, the installer informs you of the amount of data to download for the selected combination of modules.

### Documentation

Changed:
<
<
To improve the quality of the examples, we have introduced automatic testing of (many of) the source code examples occurring in manuals such as the Data Analysis Guide and the HIPE Owner's Guide. We have also introduced automatic testing of the examples occurring in the User's Reference Manual.
>
>
To improve the quality of the examples, we have introduced automatic testing of (many of) the source code examples occurring in manuals such as the Data Analysis Guide. We have also introduced automatic testing of the examples occurring in the User's Reference Manual.

## HIFI

### HIFI Software Configuration and Properties

• Generally most HIFI properties have moved from the hcss.dp.hifi build to the hcss.icc.hifi (expert) area and it is recommended that all internal ICC users always install the expert build in order to be able to run the pipeline from level -1.0.
Changed:
<
<
• Those using the expert build and wishing to run the pipeline from level zero will need to set the property var.hcss.instrument = hifi ' this so the system knows to use the HIFI binstruct settings for reading the packets. Note those using the legacy hifi-new.props file will already have this property set.
>
>
• Those using the expert build and wishing to run the pipeline from level zero will need to set the property var.hcss.instrument = hifi ' this so the system knows to use the HIFI binstruct settings for reading the packets. Those using the legacy hifi-new.props file will already have this property set.

• The hcss.dp.hifi (non-expert) build has pre-configured pools to access the HSA and the local pool via the Product Browser and PAL Storage Manager
Line: 267 to 261

• beamWidths-V

The approach so far is to strictly use observed numbers (see tables below with initial results), without involving fitting results or empirical formulas. In particular this means:

Changed:
<
<
• for beam widths the fitted widths of circular Gaussians, corrected for the convolution with the Mars disk. See Raphael Moreno's report for details. Open question: is the fit of a circular Gaussian correct? Need to check by how much Mars moved during an integration.
• for main beam efficiencies the values derived using the observed beam widths for the beam coupling. It is not yet decided if an average value or a linear interpolation between (and beyond) frequencies produces the best results
• for aperture efficiencies the values are derived, again, using observed beam widths for the coupling of the beam to the source.
>
>
• For beam widths the fitted widths of circular Gaussians, corrected for the convolution with the Mars disk. Open question: is the fit of a circular Gaussian correct? Need to check by how much Mars moved during an integration.
• For main beam efficiencies the values derived using the observed beam widths for the beam coupling. It is not yet decided if an average value or a linear interpolation between (and beyond) frequencies produces the best results
• For aperture efficiencies the values are derived, again, using observed beam widths for the coupling of the beam to the source.
In addition, the already available entries for the forward efficiencies (H and V) are updated from 1.0 to 0.96 (in all bands, all frequencies) to be compatible with above results. This requires the change of constant 1.0 to 0.96 .
Line: 390 to 384

• H and V spectrometer astrometry
SpectrumDatasets contain columns, in decimal degrees, for the commanded pointing (a position between the H and V beams known as the synthesized aperture), labelled longitude_cmd and latitude_cmd, while the actual coordinates for the spectrometer beam are found in the longitude and latitude columns.
Changed:
<
<
>
>
• DoPointing no longer fails when reapplied

Line: 422 to 416

### DoDeconvolution

Changed:
<
<
• More understandable error message when deconvolution fails (usual due to poor data input)
• Plotting of DSB solution as deconvolutions runs now possible when diag_mode_on selected
>
>
• More understandable error message when deconvolution fails (usual due to poor data input).
• Plotting of DSB solution as deconvolutions runs now possible when diag_mode_on selected.

### DoGridding

Line: 445 to 439

• Introduction of a new task, FitBaseline, to interactively fit and subtract or divide out baselines in HIFI spectra.
Deleted:
<
<

### Documentation

Changed:
<
<
• New chapters in the HIFI User's Manual: "What was done to my data?" and "HIFI Baseline Removal"
• Updates to the HIFI Users Manual: "HIFI cookbook", "Data Primer", "Running the HIFI Pipeline", "HIFI Standing Wave Removal Tool", and "Exporting HIFI data to CLASS"
• Updates to HIFI Pipeline Specification document: improved pipeline flow diagrams, improved information about Euler resampling used in DoFreq grid task of pipeline
• Creation of FitHifiFringe URM entry
>
>
• New chapters in the HIFI User's Manual: What was done to my data? and HIFI Baseline Removal.
• Updates to the HIFI Users Manual: HIFI cookbook, Data Primer, Running the HIFI Pipeline, HIFI Standing Wave Removal Tool and Exporting HIFI data to CLASS.
• Updates to HIFI Pipeline Specification document: improved pipeline flow diagrams, improved information about Euler resampling used in DoFreq grid task of pipeline.
• Creation of FitHifiFringe URM entry.

## PACS

### Pipeline

Changed:
<
<
• PACS "New Style Sliced" pipeline implementation is now activated
• Phot and spec ipipe script names were changed to be more logic and intuitive
• Pipeline Script access
>
>
• PACS "New Style Sliced" pipeline implementation is now activated.
• Phot and spec ipipe script names were changed to be more logic and intuitive.
• Pipeline Script access:

• HIPE -> Menu -> pipeline -> PACS
Changed:
<
<
• Calibration framework
>
>
• Calibration framework:
Calibration products are no longer delivered with the build in a local store.
Calibration products are now delivered as a directory of FITS files.
This directory with calibration products can be found in the data/pcal sub-directory of your installation directory.
Line: 471 to 464
CalTree read from: /Software/Herschel/hcss.dp.pacs-5.0.500/data/pcal The calibration framework is adapted and will read these FITS files by default.
Changed:
<
<
The getCalTree() command and all access to calibration data has not changed, under the hood, the local store has been replaced by the directory of FITS files.
>
>
The getCalTree() command and all access to calibration data has not changed, under the hood, the local store has been replaced by the directory of FITS files.
Other small changes:
• getCalTree(), getCalProduct() now understand the 'verbose=True' keyword and will print information on the location of the calibration products.
• getCalProduct() the third argument, 'version', is no longer mandatory, if not given, the last version of the calibration product will be returned.
Changed:
<
<
>
>
• A new Pacs Documentation page has been opened on the public wiki.

#### Photometry

Line: 491 to 484

• New script for scan Map pipeline
• Two-stage photometer pipeline with masked highpass filtering
Changed:
<
<
• Now THE standard processing script for scan maps
>
>
• Now the standard processing script for scan maps

• Photometer Mapping
• Photometer mapping accepts a variable input pixelsize (parameter pixfrac in the PhotProjectTask and the MapIndexTask).
• The MapIndexViewer has a Sigclip gui to display the effect of different Sigclip parameters on the second level deglitching. Now it is not necessary any more to guess Sigclip parameters, run the deglitching and check the quality afterwards. The new option allows to find the best parameter quickly
Changed:
<
<
BEFORE deglitching has been applied.
>
>
before deglitching has been applied.
The MapIndexViewer now also displays the signal vectors in the "timeordered" mode.
• The MapIndexViewer shows mean/median +/- error permanently in the signal plot
• The Full MapIndex needs less memory than before
• Wcs4mapTask got a crota option to manually set the requested rotation angle of a map.
Changed:
<
<
• CorrectRaDec4SsoTask is now also accepting the new Horizons class definition. An example how to use it can be found in the attached
• photProject error map has been checked for NaN
• Exposure map has been removed in favour of the coverage map
• Noise treatmement
• A new module herschel.pacs.spg.phot.PhotAddNoisePerPixelTask provides 4 ways to calculate the initial photometer noise.
>
>
• CorrectRaDec4SsoTask is now also accepting the new Horizons class definition. An example how to use it can be found in the attached.
• photProject error map has been checked for NaN.
• Exposure map has been removed in favour of the coverage map.
• Noise treatment
• A new module herschel.pacs.spg.phot.PhotAddNoisePerPixelTask provides four ways to calculate the initial photometer noise.
*Noise propagation is also implemented in the HighpassFilter, Mean- and MedianFilters.
• Pointing
Changed:
<
<
• New Horizons Product used in PACS pipeline (SSO observations)
• Residual spatial offset PACS photometer blue/green vs red
• Separate blue and green in ArrayInstrument calfile and the code using it
>
>
• New Horizons Product used in PACS pipeline (SSO observations).
• Residual spatial offset PACS photometer blue/green vs red.
• Separate blue and green in ArrayInstrument calfile and the code using it.

• Astrometric offset between two scan maps in parallel mode on the same field.
• Others
Changed:
<
<
• PACS EDP: phot pipeline adaptation to cope with variable scan velocity
>
>
• PACS EDP: phot pipeline adaptation to cope with variable scan velocity.

• framesOut = photMaskFrames(framesIn [,beforeFirstScanLeg] [,noScanData] [,afterCalblock=0] )
• beforeFirstScanLeg : Mask data befor the first scan leg
Changed:
<
<
• noScanData : mask data where the ScanBBID is not set (includes turn arounds)
>
>
• noScanData: mask data where the ScanBBID is not set (includes turn arounds)

• afterCalblock : Mask n data after calibration block
• Sigclip can now be applied n-times in one go.

#### Spectrometry

• new AOR mode "unchopped" including improved spatial calibration:
Changed:
<
<
• First draft of the unchopped mode pipeline added to the build
• A "newstyle" unchopped mode pipeline is in place which can be run automatically or interactively
• New task specSubtractOffPosition implemented for unchopped pipeline
• new interactive tool SpectrumExplorer:
• improved wavelength calibration:
• New wavelength calibration applied in waveCalc task using the wavePolynomes cal file
>
>
• First draft of the unchopped mode pipeline added to the build.
• A "newstyle" unchopped mode pipeline is in place which can be run automatically or interactively.
• New task specSubtractOffPosition implemented for unchopped pipeline .
• New interactive tool SpectrumExplorer:
• PACS Product interface to SpectrumExplorer
• Improved wavelength calibration:
• New wavelength calibration applied in waveCalc task using the wavePolynomes cal file.

• spectrometer trend analysis product for the calibration blocks:
Changed:
<
<
• Calibration block trendAnalysis product added to the observation context
• Extra options to specDiffChop (note these are EXPERT options for the analysis of special observations!)
>
>
• Calibration block trendAnalysis product added to the observation context.
• Extra options to specDiffChop (note these are expert options for the analysis of special observations!).

• Extra option 'extend' added which allows for other pairwise differencing schemes. These schemes will subtract more datapoints from each other than the standard scheme.
• Extra option 'chopNodScheme' which provides different scheme for determining which label is on-source and which is off-source for a given nodding position. Needed for some special test AORs.
• Different bands in a range scan are now stored in their own blocks in the block table. This means that it is now possible to slice SEDs per band.
Changed:
<
<
• Several fixes to specWaveRebin, etc. to reduce the amount of NaNs considerably in the rebinned data.
• SpecProject sets the flux to Jy.
>
>
• Several fixes to specWaveRebin, etc. to reduce the amount of NaNs considerably in the rebinned data.
• SpecProject sets the flux to Jy.

### Calibration

#### Photometry

Changed:
<
<
• Residual spatial offset PACS photometer blue/green vs red --> PCalPhotometer_ArrayInstrument_FM_v6.fits
>
>
• Residual spatial offset PACS photometer blue/green vs red --> PCalPhotometer_ArrayInstrument_FM_v6.fits.

#### Spectrometry

Changed:
<
<
• New Wavelength Calibration Product
>
>
• New Wavelength Calibration Product.

• Version 8 of the Pacs Spectrometer Array to Instrument and version 4 of the Module2Array cal file are inserted in the system. This generates correct values also for center chopper positions (unchopped and waveswitch mode).
Changed:
<
<
• Updated spectrometer spatial cal file --> PCalSpectrometer_ArrayInstrument_FM_v6.fits
• The RSRF calibration tables contain "NaN" which are then introduced into the signal by rsrfCal
>
>
• Updated spectrometer spatial cal file --> PCalSpectrometer_ArrayInstrument_FM_v6.fits.
• The RSRF calibration tables contain "NaN" which are then introduced into the signal by rsrfCal.

### Analysis tools

Line: 559 to 552

#### Spectrometry

Changed:
<
<
• Compatibility of PACS products with HCSS tools improved: One can now properly select data points and use the fitter tool on PACS frames and cubes.
>
>
• Compatibility of PACS products with HCSS tools improved: you can now properly select data points and use the fitter tool on PACS frames and cubes.

Line: 602 to 595

### Common Pipeline

Changed:
<
<
• Only minor changes in logs and documentation.
>
>
• Minor changes in logs and documentation.

### Photometer Pipeline

• Pipeline scripts:
Changed:
<
<
• Comment out optical and electrical crosstalk corrections
• Removed plotting blocks
>
>
• Comment out optical and electrical crosstalk corrections.
• Removed plotting blocks.

### Spectrometer Pipeline

The spectrometer pipelines have undergone major changes for version 5. It is HIGHLY recommended that users with data processed with older versions update to version 5 to reprocess their data.

Changed:
<
<
No change
>
>
No change.

#### Level-0.5 -> Level 1 (IFGM)

• Electrical crosstalk correction has been commented out of the SPG pipelines.
Line: 636 to 629

• Added NaiveProjectionTask, a new task for creating spectral simple cubes from preprocessed spectral data. This task creates spectral cubes by averaging the flux of samples within each pixel. Pixels without samples are given a value of NaN.

### Interactive Analysis and Tools

Changed:
<
<
• Added the new DTMosaic class that allows the user to plot data recorded by many detectors during one observation on a single page to compare data more effectively (mosaic plot). This features is available from HIPE command line or within DetectorTimelineExplorer
• DetectorTimelineExplorer and DetectorTimelineExplorerComponent :
• Added a new features that allows the creation of mosaic plot of the detectors via right-click on the desired array
• Improved the color scale (using the Color&Mask Preferences it is now possible to select the Min/Max value for the color scale)
• Improved the mask visualization (using the Color&Mask Preferences it's now possible to visualize any specific mask value directly on the array display)
>
>
• Added the new DTMosaic class that allows the user to plot data recorded by many detectors during one observation on a single page to compare data more effectively (mosaic plot). This features is available from HIPE command line or within DetectorTimelineExplorer.
• DetectorTimelineExplorer and DetectorTimelineExplorerComponent:
• Added a new features that allows the creation of mosaic plot of the detectors via right-click on the desired array.
• Improved the color scale (using the Color&Mask Preferences it is now possible to select the Min/Max value for the color scale).
• Improved the mask visualization (using the Color&Mask Preferences it's now possible to visualize any specific mask value directly on the array display).

• Made available the Mosaic class which creates a mosaic of plots in the shape of the SLW, SSW or coaligned detectors of the SPIRE FTS. The Mosaic class is intended to provide a means for viewing (at a glance) the spectra or interferograms associated with each detector.
• Changed SpecExplorer's detector display so that it automatically re-sizes to fit the enclosing frame. Also, SpecExplorer's detectors are now enclosed in a splitter pane. This enables you to maximize or hide the detector display with a single click.
• A new SpireMultiObs task to process several observations through the pipeline at once.

#### Revision 502010-11-16 - DavideRizzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 16 to 16

• Autocompletion in the Console has been improved.
• A variable value can be copied by right clicking on the variable in the Variables view and selecting Copy value; it can be pasted in the Console or Jython editor afterwards. This works only for strings and numbers.
Changed:
<
<
• Drag & drop a variable from the Variables view to the Console writes the variable name. The same behaviour can be achieved when dropping it to a Jython editor.
• Drag & drop selected text from a Jython editor to the Console or vice-versa copy & paste that text.
• The small level-2 preview shown in the top-right corner of the Observation Context viewer can be enlarged by just clicking on it.
>
>
• Drag & drop a variable from the Variables view to the Console to write the variable name. The same behaviour can be achieved when dropping it to a Jython editor.
• Drag & drop selected text from a Jython editor to the Console or vice-versa to copy & paste that text.
• The small level-2 preview shown in the top-right corner of the Observation Context viewer can be enlarged by clicking on it.

#### Startup & Shutdown

Changed:
<
<
If the running Java platform is not supported, a warning is popped up.
>
>
If the running Java platform is not supported, a warning is displayed.

#### Feedback

Line: 29 to 28
A feedback button has been added for documentation and HIPE functionality.
Deleted:
<
<

#### Look & Feel

Changed:
<
<
Aqua look & feel has been replaced in Mac OS X by the HIPE look & feel that is used among all platforms.
>
>
Aqua look & feel has been replaced in Mac OS X by the HIPE look & feel used on the other platforms.

#### Plug-ins

Changed:
<
<
HIPE now supports plug-ins, with are small packages that anyone can easily create and distribute to share code (Java or Jython) and data (LocalStores). Plug-ins can be downloaded and installed with a single-click.
>
>
HIPE now supports plug-ins, small packages that anyone can easily create and distribute to share code (Java or Jython) and data (LocalStores). Plug-ins can be downloaded and installed with a single-click.

### Plotting

Changed:
<
<
• Title and label can accept LaTeX commands \textrm \textit \textbf \mathrm \mathit \mathbf. for example, V$_{\textrm{LSR}}$
>
>
• Title and label can now accept the LaTeX commands \textrm \textit \textbf \mathrm \mathit \mathbf. For example: V$_{\textrm{LSR}}$

### Astronomical utilities

Changed:
<
<
• RadialVelocity now uses TimeCorrProduct to select pointing data
• SSO now uses TimeCorrProduct to select pointing data
• Improved documentation
>
>
• RadialVelocity now uses TimeCorrProduct to select pointing data.
• SSO now uses TimeCorrProduct to select pointing data.
• Improved documentation.

### Numeric routines

#### Data fitting

Changed:
<
<
• A complete new GUI for the SpectrumFitter is added. Start it from the SpectrumExplorer right mouse menu, select SpectrumFitterGUI. Besides the functionality that was available in the SpectrumFitterTool, the GUI has an export TAB that enables the user to export the residual, total model, and individual models as an object with the type of the input object and as ASCII.
>
>
• A complete new GUI for the SpectrumFitter was added. Start it from the SpectrumExplorer right mouse menu, select SpectrumFitterGUI. Besides the functionality that was available in the SpectrumFitterTool, the GUI has an export tab that enables you to export the residual, total model, and individual models as an object with the type of the input object and as text.

• The SpectrumFitter (commandline version) accepts Container with PointSpectrum and SpectralSegment index.
Changed:
<
<
• The SpectrumFitter (commandline version) has methods to export the data as the input type and as ASCII.
• The SpectrumFitter (commandline version) has method that returns a Jython script
>
>
• The SpectrumFitter (commandline version) has methods to export the data as the input type and as text.
• The SpectrumFitter (commandline version) has method that returns a Jython script.

#### Random Numbers

• New random numbers generators from different distribution: Uniform, Gaussian, Poisson, Gamma, Cauchy (Lorentz), Exponential and Jeffreys.

#### Statistics functions

Changed:
<
<
• RMS has been renamed to QRMS
• RMS implements a new functionality (see URM)
>
>
• RMS has been renamed to QRMS.
• RMS implements a new functionality (see the User Reference Manual).

• Improved StdDev and Variance algorithms.
• Improved CorrelateMatrix algorithm.

##### New functions
Changed:
<
<
• GeoMean which calculates the geometric mean of a array of numeric data types with 1 to 5 dimensions.
• Mode which returns the mode(s), or the most common element(s), of an array of numeric data with 1 to 5 dimensions.
• Covariance which yields the covariance between two random variables/vectors x and y with finite second moments. If one vector is longer than the other, only the values up to the length of the shorter vector will be taken into account.
• CovarianceMatrix which returns the covariance matrix of the input M x N matrix. The result is a N x N matrix with each i, j value equal to the covariance of the ith and jth columns of the original matrix.
>
>
• GeoMean, which calculates the geometric mean of a array of numeric data types with 1 to 5 dimensions.
• Mode, which returns the mode(s), or the most common element(s), of an array of numeric data with 1 to 5 dimensions.
• Covariance, which returns the covariance between two random variables/vectors x and y with finite second moments. If one vector is longer than the other, only the values up to the length of the shorter vector will be taken into account.
• CovarianceMatrix, which returns the covariance matrix of the input M x N matrix. The result is a N x N matrix with each i, j value equal to the covariance of the ith and jth columns of the original matrix.

#### Other functions

• SigClip
Changed:
<
<
• Median mode uses Median Absolute Deviation instead of Standard deviation.
>
>
• Median mode uses median absolute deviation instead of standard deviation.

• Iterative use is allowed.
Deleted:
<
<

### Source extraction

• No significant changes to functionality.

### Images

#### Display

Changed:
<
<
• Images can be opened as RgbImage directly from the Navigator in HIPE.
• Regular image files (jpg, gif, png, ...) are shown as preview in the outline when being clicked on in the navigator view of hipe.
• 2 images can be compared by setting the opacity of the image. This can be done using the setOpacity(float) method or using a slider in the Image Display.
>
>
• Images can be opened as RgbImage directly from the Navigator in HIPE.
• Regular image files (jpg, gif, png, ...) are shown as preview in the outline when being clicked on in the navigator view of HIPE.
• Two images can be compared by setting the opacity of the image. This can be done using the setOpacity(float) method or using a slider in the Image Display.

#### Analysis

Changed:
<
<
• Added the methods containsNorthCelestialPole and containsSouthCelestialPole on the Wcs.
• Regridding an image on the grid of another image using RegridTask
• Update of URM documentation
• Cropping an image by drawing a rectangle on it
• Correction of the calculation of the dimensions of a mosaic
>
>
• Added the methods containsNorthCelestialPole and containsSouthCelestialPole to the Wcs.
• Regridding an image on the grid of another image using RegridTask.
• Update of documentation in the User Reference Manual.
• You can now crop an image by drawing a rectangle on it
• Correction of the calculation of the dimensions of a mosaic.

### Spectra

#### Display

Changed:
<
<
• Task & Tools Toolbox All task and tool panels are displayed in the same toolbox panel and selectable through a drop-down list. The task gui components have become more clear as well.
>
>
• Task & Tools Toolbox: All task and tool panels are displayed in the same toolbox panel and selectable through a drop-down list. The task GUI components have become clearer as well.
Instead of dragging a selection of spectra to the dataset parameter, the task is applied on either the displayed or the selected spectra within the plot.
Changed:
<
<
• Load selectable datasets from a product When opening the spectrum explorer on a Product, a selection table is displayed showing all datasets that are stored in this Product along with certain characteristics.
>
>
• Load selectable datasets from a product: When opening the spectrum explorer on a product, a selection table is displayed showing all datasets that are stored in this product along with certain characteristics.
Just as within the original spectrum selection panel, these datasets can be sorted by clicking on the headercolumns. To load a set of datasets instead of just one or all, select each row and right click to load the selected datasets.
Changed:
<
<
• Realtime statistics information Selecting the Statistics task within the Toolbox displays realtime statistics while dragging ranges in the plot.
• Added relativistic frequency to velocity transform When changing the unit of the wave axis to velocity the transform is now relativistic
>
>
• Realtime statistics information: Selecting the Statistics task within the Toolbox displays realtime statistics while dragging ranges in the plot.
• Added relativistic frequency to velocity transform: When changing the unit of the wave axis to velocity the transform is now relativistic.

#### Analysis

Changed:
<
<
• Gaussian resampling introduced
>
>
• Gaussian resampling introduced.

Line: 117 to 107

### Herschel Science Archive

• Support for exporting data in packed HSA format.
• Import and Export Views improvements:
Changed:
<
<
• better error reporting
• file dialogs can show hidden files
• versions of observations inside pools shown
>
>
• Better error reporting
• File dialogue windows can show hidden files
• Versions of observations inside pools are now shown

#### Pipeline processing

• Crated a daemon dispatcher mechanism.
• Aliases set tool has been modified for performing the required verifications before a tag is ingested.
• HsaPoolDaemon
Changed:
<
<
• releases memory calling Java garbage collector if it is needed.
• can write compressed files.
• can save a binary representation of a product if the FITS save operation fails.
>
>
• Releases memory calling Java garbage collector if it is needed.
• Can write compressed files.
• Can save a binary representation of a product if the FITS save operation fails.

• HsaStagePool can export products into a LocalStore.
• HSA ingestion procedure can generate an XML ingestion request file even if a previous version does not contain its own XML.
Deleted:
<
<
• Improved test-harnesses to include an HAIO simulated server framework.

Line: 138 to 127

### Products and datasets

Changed:
<
<
• Product comparison API is available in ia_toolbox_util module.
>
>
• Product comparison API is available in the ia_toolbox_util module.

#### Observation context

Changed:
<
<
• Include new metadata "slewTime" returning the scheduled start time of the slew as a FineTime
• Specific accessors, getSlewStartTime() and setSlewStartTime(), where added to the ObservationContext class
• For old observations in the HSA without this value, the method will return a null value indicating that this field was never set before
>
>
• Include new metadata slewTime returning the scheduled start time of the slew as a FineTime.
• Specific accessors, getSlewStartTime() and setSlewStartTime(), where added to the ObservationContext class.
• For old observations in the HSA without this value, the method will return a null value indicating that this field was never set before.

Line: 470 to 459

### Pipeline

• PACS "New Style Sliced" pipeline implementation is now activated
Changed:
<
<
• PacsSpr:2647 : phot and spec ipipe script names are changed to be more logic and intuitive
>
>
• Phot and spec ipipe script names were changed to be more logic and intuitive

• Pipeline Script access
• HIPE -> Menu -> pipeline -> PACS
• Calibration framework
Line: 493 to 482

• Extended Madmap (using scan and cross scan) for interactive usage
• HIPE -> Menu -> pipeline -> PACS -> L2_scanMap.py
Changed:
<
<
Based on HCSS-9361, a prototype for the extended Madmap pipeline is now available in HIPE for interactive usage. The extended Madmap pipeline is designed to combine scans and cross-scans in order to produce optional map. Unlike DP pipelines (which normally starts with one ObservationContext), this pipeline takes an obsList (an ArrayList) which is a list of ObservationContext. The pipeline will run even there is only one obs in the obsList. Below is an example creating an obsList:
>
>
A prototype for the extended Madmap pipeline is now available in HIPE for interactive usage. The extended Madmap pipeline is designed to combine scans and cross-scans in order to produce optional map. Unlike DP pipelines (which normally starts with one ObservationContext), this pipeline takes an obsList (an ArrayList) which is a list of ObservationContext. The pipeline will run even there is only one obs in the obsList. Below is an example creating an obsList:

HIPE> obsList=ArrayList()
Line: 501 to 490

• New script for scan Map pipeline
Changed:
<
<
• PacsSpr:2801 Proposal for a two-stage photometer pipeline with masked highpass filtering
>
>
• Two-stage photometer pipeline with masked highpass filtering

• Now THE standard processing script for scan maps
• Photometer Mapping
Changed:
<
<
• PacsSpr:2853: Photometer mapping accepts a variable input pixelsize (parameter pixfrac in the PhotProjectTask and the MapIndexTask).
• PacsSpr:2789: The MapIndexViewer has a Sigclip gui to display the effect of different Sigclip parameters on the second level deglitching. Now it is not necessary any
>
>
• Photometer mapping accepts a variable input pixelsize (parameter pixfrac in the PhotProjectTask and the MapIndexTask).
• The MapIndexViewer has a Sigclip gui to display the effect of different Sigclip parameters on the second level deglitching. Now it is not necessary any
more to guess Sigclip parameters, run the deglitching and check the quality afterwards. The new option allows to find the best parameter quickly BEFORE deglitching has been applied.
The MapIndexViewer now also displays the signal vectors in the "timeordered" mode.
Changed:
<
<
• PacsSpr:2921: the MapIndexViewer shows mean/median +/- error permanently in the signal plot
• PacsSpr:2807: the Full MapIndex needs less memory than before
• PacsSpr:2859: Wcs4mapTask got a crota option to manually set the requested rotation angle of a map.
• PacsSpr:2925: CorrectRaDec4SsoTask is now also accepting the new Horizons class definition. An example how to use it can be found in the attached
• PacsSpr:2751 : photProject error map has been checked for NaN
• PacsSpr:2543 : exposure map has been removed in favour of the coverage map
>
>
• The MapIndexViewer shows mean/median +/- error permanently in the signal plot
• The Full MapIndex needs less memory than before
• Wcs4mapTask got a crota option to manually set the requested rotation angle of a map.
• CorrectRaDec4SsoTask is now also accepting the new Horizons class definition. An example how to use it can be found in the attached
• photProject error map has been checked for NaN
• Exposure map has been removed in favour of the coverage map

• Noise treatmement
Changed:
<
<
• PacsSpr:2752: A new modul herschel.pacs.spg.phot.PhotAddNoisePerPixelTask provides 4 ways to calculate the initial photometer noise.
>
>
• A new module herschel.pacs.spg.phot.PhotAddNoisePerPixelTask provides 4 ways to calculate the initial photometer noise.
*Noise propagation is also implemented in the HighpassFilter, Mean- and MedianFilters.
• Pointing
• New Horizons Product used in PACS pipeline (SSO observations)
Changed:
<
<
>
>
• Residual spatial offset PACS photometer blue/green vs red
• Separate blue and green in ArrayInstrument calfile and the code using it
• Astrometric offset between two scan maps in parallel mode on the same field.

• Others
Changed:
<
<
• PacsSpr:2761 PACS EDP: phot pipeline adaptation to cope with variable scan velocity
>
>
• PACS EDP: phot pipeline adaptation to cope with variable scan velocity

• framesOut = photMaskFrames(framesIn [,beforeFirstScanLeg] [,noScanData] [,afterCalblock=0] )
• beforeFirstScanLeg : Mask data befor the first scan leg
• noScanData : mask data where the ScanBBID is not set (includes turn arounds)
• afterCalblock : Mask n data after calibration block
Changed:
<
<
>
>
• Sigclip can now be applied n-times in one go.

#### Spectrometry

• new AOR mode "unchopped" including improved spatial calibration:
• First draft of the unchopped mode pipeline added to the build
Changed:
<
<
• PacsScr:2779: a "newstyle" unchopped mode pipeline is in place which can be run automatically or interactively
• PacsScr:1048 New task specSubtractOffPosition implemented for unchopped pipeline
>
>
• A "newstyle" unchopped mode pipeline is in place which can be run automatically or interactively
• New task specSubtractOffPosition implemented for unchopped pipeline

Changed:
<
<
>
>

• improved wavelength calibration:
Changed:
<
<
• PacsScr:2964: new wavelength calibration applied in waveCalc task using the wavePolynomes cal file
>
>
• New wavelength calibration applied in waveCalc task using the wavePolynomes cal file

• spectrometer trend analysis product for the calibration blocks:
Changed:
<
<
• PacsScr:2777: calibration block trendAnalysis product added to the observation context
>
>
• Calibration block trendAnalysis product added to the observation context

• Extra options to specDiffChop (note these are EXPERT options for the analysis of special observations!)
Changed:
<
<
• PacsScr:2717: extra option 'extend' added which allows for other pairwise differencing schemes. These schemes will subtract more datapoints from each other than the standard scheme.
• PacsScr:2427: extra option 'chopNodScheme' which provides different scheme for determining which label is on-source and which is off-source for a given nodding position. Needed for some special test AORs.
• Different bands in a range scan are now stored in their own blocks in the block table. This means that it is now possible to slice SEDs per band (PacsScr:2963).
>
>
• Extra option 'extend' added which allows for other pairwise differencing schemes. These schemes will subtract more datapoints from each other than the standard scheme.
• Extra option 'chopNodScheme' which provides different scheme for determining which label is on-source and which is off-source for a given nodding position. Needed for some special test AORs.
• Different bands in a range scan are now stored in their own blocks in the block table. This means that it is now possible to slice SEDs per band.

• Several fixes to specWaveRebin, etc. to reduce the amount of NaNs considerably in the rebinned data.
• SpecProject sets the flux to Jy.

Line: 558 to 546

#### Photometry

Changed:
<
<
>
>
• Residual spatial offset PACS photometer blue/green vs red --> PCalPhotometer_ArrayInstrument_FM_v6.fits

#### Spectrometry

Changed:
<
<
• PacsSpr:2488 : New Wavelength Calibration Product
• PacsSpr:2855 v8 of the Pacs Spectrometer Array to Intrument and v4 of the Module2Array cal file is inserted in the system. This generates correct values also for center chopper positions (unchopped and waveswitch mode).
• PacsSpr:2715 : updated spectrometer spatial cal file --> PCalSpectrometer_ArrayInstrument_FM_v6.fits
• PacsSpr:2607 The RSRF calibration tables contain "NaN" which are then introduced into the signal by rsrfCal
>
>
• New Wavelength Calibration Product
• Version 8 of the Pacs Spectrometer Array to Instrument and version 4 of the Module2Array cal file are inserted in the system. This generates correct values also for center chopper positions (unchopped and waveswitch mode).
• Updated spectrometer spatial cal file --> PCalSpectrometer_ArrayInstrument_FM_v6.fits
• The RSRF calibration tables contain "NaN" which are then introduced into the signal by rsrfCal

### Analysis tools

#### Revision 492010-10-14 - SteveGuest

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 586 to 586

### Calibration Products

#### Photometer

>
>
Updated
1. Flux Calibration updated for the nominal voltages.
2. Temperature Drift Correction to match the new flux conversion.

#### Spectrometer

New
1. Non-linear phase
Line: 602 to 606

### Calibration Framework

>
>
• Updated to match the new products and dependencies.
• The spireCal task now has an option to read from a local pool.

### Engineering Conversion

Line: 649 to 656

• Improved the mask visualization (using the Color&Mask Preferences it's now possible to visualize any specific mask value directly on the array display)
• Made available the Mosaic class which creates a mosaic of plots in the shape of the SLW, SSW or coaligned detectors of the SPIRE FTS. The Mosaic class is intended to provide a means for viewing (at a glance) the spectra or interferograms associated with each detector.
• Changed SpecExplorer's detector display so that it automatically re-sizes to fit the enclosing frame. Also, SpecExplorer's detectors are now enclosed in a splitter pane. This enables you to maximize or hide the detector display with a single click.
>
>
• A new SpireMultiObs task to process several observations through the pipeline at once.

### Documentation

#### Revision 482010-10-07 - StephanOtt

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 24 to 24
If the running Java platform is not supported, a warning is popped up.
>
>

#### Feedback

A feedback button has been added for documentation and HIPE functionality.

#### Look & Feel

Aqua look & feel has been replaced in Mac OS X by the HIPE look & feel that is used among all platforms.

Line: 42 to 48

### Astronomical utilities

• RadialVelocity now uses TimeCorrProduct to select pointing data
Changed:
<
<
• SSo now uses TimeCorrProduct to select pointing data
>
>
• SSO now uses TimeCorrProduct to select pointing data

• Improved documentation

### Numeric routines

Line: 138 to 144

• Include new metadata "slewTime" returning the scheduled start time of the slew as a FineTime
• Specific accessors, getSlewStartTime() and setSlewStartTime(), where added to the ObservationContext class
Changed:
<
<
• For old observations in the hsa without this value, the method will return a null value indicating that this field was never set before
>
>
• For old observations in the HSA without this value, the method will return a null value indicating that this field was never set before

#### History

Line: 165 to 171

• Updated documentation:
• wiki chapters
Changed:
<
<
• Standarized _ doc _ of general tasks (signature, description, parameter descriptions)
>
>
• Standardised _ doc _ of general tasks (signature, description, parameter descriptions)

• Examples of general tasks in the URM are now tested automatically
• Compress and Decompress tasks: they support zip, tar, gzip, tgz in a portable way and decompress can guess the compression of a file.
Line: 173 to 179

### Quality control

Changed:
<
<
• New metadata into the QualityContext product. The field is fixed and the main interest is to include this information into the FITs file associated to the product.
>
>
• New metadata into the QualityContext product. The field is fixed and the main interest is to include this information into the FITS file associated to the product.

FITS keyword Value
PCAVEATS Please refer to http://herschel.esac.esa.int/DpKnownIssues.shtml for known problems in products
Changed:
<
<
• Perform bulk actions on several qc reports simultaneously
• Flags color codes depending on their importance
>
>
• Perform bulk actions on several quality control reports simultaneously
• Flags colour codes depending on their importance

Line: 393 to 399

### Level 0 Pipeline

Changed:
<
<
• H and V spectrometer astronometry
>
>
• H and V spectrometer astrometry
SpectrumDatasets contain columns, in decimal degrees, for the commanded pointing (a position between the H and V beams known as the synthesized aperture), labelled longitude_cmd and latitude_cmd, while the actual coordinates for the spectrometer beam are found in the longitude and latitude columns.

#### Revision 472010-10-07 - WernerSalomons

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 91 to 91

• Correction of the calculation of the dimensions of a mosaic

### Spectra

#### Display

>
>
• Task & Tools Toolbox All task and tool panels are displayed in the same toolbox panel and selectable through a drop-down list. The task gui components have become more clear as well. Instead of dragging a selection of spectra to the dataset parameter, the task is applied on either the displayed or the selected spectra within the plot.
• Load selectable datasets from a product When opening the spectrum explorer on a Product, a selection table is displayed showing all datasets that are stored in this Product along with certain characteristics. Just as within the original spectrum selection panel, these datasets can be sorted by clicking on the headercolumns. To load a set of datasets instead of just one or all, select each row and right click to load the selected datasets.
• Realtime statistics information Selecting the Statistics task within the Toolbox displays realtime statistics while dragging ranges in the plot.
• Added relativistic frequency to velocity transform When changing the unit of the wave axis to velocity the transform is now relativistic

#### Analysis

• Gaussian resampling introduced

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 424 to 424

### FitHifiFringe

Changed:
<
<
• Now possible to remove from the spectrum the smoothed baseline calculated by FitHIFIFringe. This option should be used with care as real spectral features can be removed this way
>
>
• It is now possible to remove the smoothed baseline calculated by FitHifiFringe from the spectrum, in addition to the fitted sine waves. This option (sub_base) should be used with care as real spectral features can be removed this way. For interactive fitting of polynomial baselines, the new task FitBaseline is recommended.

• Tooltips implemented
• Improved error messaging

#### Revision 452010-10-05 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 426 to 426

• Now possible to remove from the spectrum the smoothed baseline calculated by FitHIFIFringe. This option should be used with care as real spectral features can be removed this way
• Tooltips implemented
>
>
• Improved error messaging

### HiClass export tool

#### Revision 442010-10-04 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 385 to 385

• H and V spectrometer astronometry
SpectrumDatasets contain columns, in decimal degrees, for the commanded pointing (a position between the H and V beams known as the synthesized aperture), labelled longitude_cmd and latitude_cmd, while the actual coordinates for the spectrometer beam are found in the longitude and latitude columns.
>
>

### WBS Pipeline

>
>
• Fixes for frequency calibration in the case that line centres fall precisely in the middle of two pixels

### Level 2 Pipeline

Line: 408 to 411

• hifiPipeline will make an ObservationContext even if creation of trend products fails
>
>
• hifiPipeline GUI layout improved to make more efficient use of space

### Products

Line: 423 to 427

• Now possible to remove from the spectrum the smoothed baseline calculated by FitHIFIFringe. This option should be used with care as real spectral features can be removed this way
• Tooltips implemented
Deleted:
<
<

### FitBaseline

• New task introduced to interactively fit and subtract or divide out baselines in HIFI spectra.

### HiClass export tool

>
>
• HiClass will now appear an an applicable task for HTP as well as ObservationContexts

### HIFI DP scripts (User tool scripts)

>
>
• Introduction of a new task, FitBaseline, to interactively fit and subtract or divide out baselines in HIFI spectra.

### Documentation

• New chapters in the HIFI User's Manual: "What was done to my data?" and "HIFI Baseline Removal"

#### Revision 432010-10-04 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 92 to 92

### Spectra

#### Analysis

>
>
• Gaussian resampling introduced

### Data cubes

#### Display

Line: 239 to 240

• The hcss.dp.hifi (non-expert) build has pre-configured pools to access the HSA and the local pool via the Product Browser and PAL Storage Manager
>
>
• Unnecessary and deprecated properties files have been removed from the system

### HIFI Calibration

• The minimum and maximum chopper threshold values have been changed.
• HkThresholdsContext_H fpuChopperMin -> -0.04
Line: 258 to 261

• beamWidths-H
• beamWidths-V

Changed:
<
<
The approach so far is to strictly use observed numbers (see tables below), without involving fitting results or empirical formulas. In particular this means:
>
>
The approach so far is to strictly use observed numbers (see tables below with initial results), without involving fitting results or empirical formulas. In particular this means:
* for beam widths the fitted widths of circular Gaussians, corrected for the convolution with the Mars disk. See Raphael Moreno's report for details. Open question: is the fit of a circular Gaussian correct? Need to check by how much Mars moved during an integration.
Changed:
<
<
* for main beam efficiencies the values derived by Raphael (case c, i.e. using the observed beam widths for the beam coupling). Do we want to interpolate linearly between (and beyond) frequencies or do we want to use an average value per band? * for aperture efficiencies the values derived by me, again using observed beam widths for the coupling of the beam to the source.
>
>
• for main beam efficiencies the values derived using the observed beam widths for the beam coupling. It is not yet decided if an average value or a linear interpolation between (and beyond) frequencies produces the best results
• for aperture efficiencies the values are derived, again, using observed beam widths for the coupling of the beam to the source.
In addition, the already available entries for the forward efficiencies (H and V) are updated from 1.0 to 0.96 (in all bands, all frequencies) to be compatible with above results. This requires the change of constant 1.0 to 0.96 .
Changed:
<
<
 Aperture Efficiency (H)
>
>
 Aperture Efficiency (H)

 Band Frequency (GHz) Eta_A 1a 491 0.692 1b 610 0.693
Line: 283 to 286

 7b 1807 0.627 7b 1893 0.604
>
>
 Aperture Efficiency (V) Band Frequency (GHz) Eta_A 1a 491 0.656 1b 610 0.668 2a 648 0.706 2b 770 0.694 3a 828 0.725 3b 948 0.734 4a 1012 0.724 4b 1112 0.744 5a 1127 0.588 5b 1243 0.588 6a 1483 0.675 6b 1625 0.597 7a 1703 0.582 7b 1807 0.650 7b 1893 0.674

 Beam Efficiency (H) Band frequency (GHz) eta_mb 1a 491 0.719 1b 610 0.708 2a 648 0.752 2b 770 0.719 3a 828 0.716 3b 948 0.739 4a 1012 0.712 4b 1112 0.764 5a 1127 0.682 5b 1243 0.677 6a 1483 0.707 6b 1625 0.691 7a 1703 0.620 7b 1807 0.664 7b 1893 0.650

 Beam Efficiency (V) Band Frequency (GHz) eta_mb 1a 491 0.71 1b 610 0.730 2a 648 0.767 2b 770 0.739 3a 828 0.716 3b 948 0.740 4a 1012 0.697 4b 1112 0.747 5a 1127 0.705 5b 1243 0.721 6a 1483 0.738 6b 1625 0.652 7a 1703 0.720 7b 1807 0.747 7b 1893 0.716

 Beam Widths (H) Band Frequency (GHz) HPBW 1a 491 43.22154 1b 610 34.49101 2a 648 33.54672 2b 770 27.83073 3a 828 26.07131 3b 948 22.95481 4a 1012 21.29627 4b 1112 19.62355 5a 1127 19.38483 5b 1243 18.38567 6a 1483 14.48873 6b 1625 13.29430 7a 1703 12.28931 7b 1807 11.83705 7b 1893 11.39468

 Beam Widths (V) Band Frequency (GHz) HPBW 1a 491 44.30458 1b 610 35.66471 2a 648 33.47924 2b 770 27.89113 3a 828 24.98089 3b 948 22.03684 4a 1012 20.16164 4b 1112 18.74398 5a 1127 20.21393 5b 1243 18.54717 6a 1483 14.66947 6b 1625 13.38736 7a 1703 13.59736 7b 1807 12.34126 7b 1893 11.32418

Note these are still initial results, measurements from ODs 390, 391, 406 and 407 still need to be added. One can use the developer part of calibration tree, where newer values will be tested first, by setting the following property:

Line: 290 to 383

### Level 0 Pipeline

>
>
• H and V spectrometer astronometry
SpectrumDatasets contain columns, in decimal degrees, for the commanded pointing (a position between the H and V beams known as the synthesized aperture), labelled longitude_cmd and latitude_cmd, while the actual coordinates for the spectrometer beam are found in the longitude and latitude columns.

### WBS Pipeline

Line: 300 to 396

>
>
• The path/filename for a user defined/edited pipeline algorithm can now be passed to the hifiPipeline task via the command line, previously this was only possible in the GUI.

obs =hifiPipeline (obs=obs, level2AlgoPath="/home/Me/myLevel2Algo.py")

The older method of defining a function with the def keyword in Jython and passing that function to the hifiPipeline task still exists

obs =hifiPipeline (obs=obs, level2Algo=level2PipelineAlgo)

• hifiPipeline will make an ObservationContext even if creation of trend products fails

### DoDeconvolution

>
>
• More understandable error message when deconvolution fails (usual due to poor data input)
• Plotting of DSB solution as deconvolutions runs now possible when diag_mode_on selected

### FitHifiFringe

>
>
• Now possible to remove from the spectrum the smoothed baseline calculated by FitHIFIFringe. This option should be used with care as real spectral features can be removed this way
• Tooltips implemented

### FitBaseline

• New task introduced to interactively fit and subtract or divide out baselines in HIFI spectra.

Line: 318 to 437

### Documentation

>
>
• New chapters in the HIFI User's Manual: "What was done to my data?" and "HIFI Baseline Removal"
• Updates to the HIFI Users Manual: "HIFI cookbook", "Data Primer", "Running the HIFI Pipeline", "HIFI Standing Wave Removal Tool", and "Exporting HIFI data to CLASS"
• Updates to HIFI Pipeline Specification document: improved pipeline flow diagrams, improved information about Euler resampling used in DoFreq grid task of pipeline
• Creation of FitHifiFringe URM entry

## PACS

#### Revision 422010-10-04 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 233 to 233

## HIFI

### HIFI Software Configuration and Properties

>
>
• Generally most HIFI properties have moved from the hcss.dp.hifi build to the hcss.icc.hifi (expert) area and it is recommended that all internal ICC users always install the expert build in order to be able to run the pipeline from level -1.0.

• Those using the expert build and wishing to run the pipeline from level zero will need to set the property var.hcss.instrument = hifi ' this so the system knows to use the HIFI binstruct settings for reading the packets. Note those using the legacy hifi-new.props file will already have this property set.

• The hcss.dp.hifi (non-expert) build has pre-configured pools to access the HSA and the local pool via the Product Browser and PAL Storage Manager

### HIFI Calibration

>
>
• The minimum and maximum chopper threshold values have been changed.
• HkThresholdsContext_H fpuChopperMin -> -0.04
• HkThresholdsContext_V fpuChopperMin -> -0.04
• HkThresholdsContext_H fpuChopperMax -> 0.06
• HkThresholdsContext_H fpuChopperMax -> 0.06
Previous values used were those appropriate for the Hot and Cold black bodies, which are not representative of the full, planned range of the chopper. As a result, the quality control flag "FPU Check: Chopper measured values differ from the commanded" had been frequently raised more than necessary.

• The upper limit of the mixer current quality control check for HEBs (bands 6 and 7) have been decreased from 0.08 mA to 0.055 mA, where tests have shown the mixers start to be under-pumped.

• Update to calibration tree for results of Mars beam measurements
The following items have been added to the HIFI Calibration tree for the aperture efficiencies (H and V), main beam efficiencies (H and V), and the half power beam widths (H and V) :
• apertureEfficiency-H
• apertureEfficiency-V
• beamEfficiency-H
• beamEfficiency-V
• beamWidths-H
• beamWidths-V

The approach so far is to strictly use observed numbers (see tables below), without involving fitting results or empirical formulas. In particular this means: * for beam widths the fitted widths of circular Gaussians, corrected for the convolution with the Mars disk. See Raphael Moreno's report for details. Open question: is the fit of a circular Gaussian correct? Need to check by how much Mars moved during an integration. * for main beam efficiencies the values derived by Raphael (case c, i.e. using the observed beam widths for the beam coupling). Do we want to interpolate linearly between (and beyond) frequencies or do we want to use an average value per band? * for aperture efficiencies the values derived by me, again using observed beam widths for the coupling of the beam to the source.

In addition, the already available entries for the forward efficiencies (H and V) are updated from 1.0 to 0.96 (in all bands, all frequencies) to be compatible with above results. This requires the change of constant 1.0 to 0.96 .

 Aperture Efficiency (H) Band Frequency (GHz) Eta_A 1a 491 0.692 1b 610 0.693 2a 648 0.689 2b 770 0.678 3a 828 0.665 3b 948 0.676 4a 1012 0.664 4b 1112 0.695 5a 1127 0.618 5b 1243 0.561 6a 1483 0.663 6b 1625 0.642 7a 1703 0.613 7b 1807 0.627 7b 1893 0.604

Note these are still initial results, measurements from ODs 390, 391, 406 and 407 still need to be added. One can use the developer part of calibration tree, where newer values will be tested first, by setting the following property: Configuration.setProperty("hcss.ia.obs.cal.release", "developer")

### Level 0 Pipeline

#### Revision 412010-10-04 - CarolynMcCoey

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 232 to 232

## HIFI

Changed:
<
<

>
>

Line: 242 to 246

>
>

### DoDeconvolution

#### Revision 402010-09-30 - TrevorFulton

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 380 to 380

## SPIRE

### Calibration Products

>
>

#### Spectrometer

New
1. Non-linear phase
• This calibration product is used by the phase correction module to make the data symmetric prior to application of the Fourier transform.
2. Spectrometer Instrument RSRF
• This calibration product is used, along with the instrument temperatures from the housekeeping telemetry, to compute a model for the contribution to the measured spectra from the SPIRE instrument.
3. Telescope RSRF
• This calibration product is used, along with the Telescope temperatures from the housekeeping telemetry, to compute a model for the contribution to the measured spectra from the Herschel Telescope.
• This calibration product is also used for extended source flux calibration.

Updated

1. Point-source RSRF
• This calibration product has been updated to use a higher signal-to-noise observation of Uranus.

Line: 398 to 413

### Spectrometer Pipeline

>
>
The spectrometer pipelines have undergone major changes for version 5. It is HIGHLY recommended that users with data processed with older versions update to version 5 to reprocess their data.

No change

#### Level-0.5 -> Level 1 (IFGM)

• Electrical crosstalk correction has been commented out of the SPG pipelines.

#### Level 1 (IFGM) -> Single-sided Fourier transform

• Subtraction of the Instrument/Telescope contribution has been moved to the spectral domain.
• Phase correction now uses a Jiggle dependent empirically-derived Non-linear phase cal product.

#### Single-sided Fourier transform -> Level 1 (SPEC)

• Correction for the contribution of the SPIRE instrument. A new processing step has been added to remove from the measured spectrum the contribution from the SPIRE instrument.
• Correction for the contribution of the Herschel Telescope. A new processing step has been added to remove from the measured spectrum the contribution from the Herschel Telescope.
• Optical crosstalk correction has been commented out of the SPG pipelines.

#### Level 1 (SPEC) -> Level 2

1. SOF1 Sparse spatial sampling mode
• A minor change in that the point source calibration product is now tailored to spectral resolution and apodization.
2. Mapping Modes

• Added NaiveProjectionTask, a new task for creating spectral simple cubes from preprocessed spectral data. This task creates spectral cubes by averaging the flux of samples within each pixel. Pixels without samples are given a value of NaN.

### Interactive Analysis and Tools

Line: 405 to 441

Changed:
<
<
• Improved the color scale (using the Color&Mask Preferences it's now possible to select the Min/Max value fot the color scale)
>
>
• Improved the color scale (using the Color&Mask Preferences it is now possible to select the Min/Max value for the color scale)

• Improved the mask visualization (using the Color&Mask Preferences it's now possible to visualize any specific mask value directly on the array display)
• Made available the Mosaic class which creates a mosaic of plots in the shape of the SLW, SSW or coaligned detectors of the SPIRE FTS. The Mosaic class is intended to provide a means for viewing (at a glance) the spectra or interferograms associated with each detector.
Changed:
<
<
• Changed SpecExplorer's detector display so that it automatically resizes to fit the enclosing frame. Also, SpecExplorer's detectors are now enclosed in a splitter pane. This enables you to maximize or hide the detector display with a single click.
>
>
• Changed SpecExplorer's detector display so that it automatically re-sizes to fit the enclosing frame. Also, SpecExplorer's detectors are now enclosed in a splitter pane. This enables you to maximize or hide the detector display with a single click.

### Documentation

#### Revision 392010-09-29 - JaimeSaiz

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 10 to 10

### HIPE

Changed:
<
<

>
>

#### Editors & Views

Changed:
<
<
Files ending with extension ".csv" are recognized as tables, and opened as such with double click.

#### Editors & Viewers

The small level-2 preview shown in the top-right corner of the Observation Context viewer can be enlarged by just clicking on it.

>
>
• Files ending with extension ".csv" are recognized as tables, and opened as such with double click in the Navigator view or with File > Open.
• Autocompletion in the Console has been improved.
• A variable value can be copied by right clicking on the variable in the Variables view and selecting Copy value; it can be pasted in the Console or Jython editor afterwards. This works only for strings and numbers.
• Drag & drop a variable from the Variables view to the Console writes the variable name. The same behaviour can be achieved when dropping it to a Jython editor.
• Drag & drop selected text from a Jython editor to the Console or vice-versa copy & paste that text.
• The small level-2 preview shown in the top-right corner of the Observation Context viewer can be enlarged by just clicking on it.

#### Startup & Shutdown

Line: 30 to 32
HIPE now supports plug-ins, with are small packages that anyone can easily create and distribute to share code (Java or Jython) and data (LocalStores). Plug-ins can be downloaded and installed with a single-click.
Deleted:
<
<

#### Miscellanea

• For writing a variable's name in the Jython editor or the Console, just drag & drop it there from the Variables view.
• Drag & drop selected text from a Jython editor to the Console or vice-versa copy & paste that text.

### Plotting

• Title and label can accept LaTeX commands \textrm \textit \textbf \mathrm \mathit \mathbf. for example, V$_{\textrm{LSR}}$
Line: 50 to 47

### Numeric routines

#### Data fitting

Changed:
<
<
>
>
• A complete new GUI for the SpectrumFitter is added. Start it from the SpectrumExplorer right mouse menu, select SpectrumFitterGUI. Besides the functionality that was available in the SpectrumFitterTool, the GUI has an export TAB that enables the user to export the residual, total model, and individual models as an object with the type of the input object and as ASCII.
• The SpectrumFitter (commandline version) accepts Container with PointSpectrum and SpectralSegment index.
• The SpectrumFitter (commandline version) has methods to export the data as the input type and as ASCII.
• The SpectrumFitter (commandline version) has method that returns a Jython script

#### Random Numbers

• New random numbers generators from different distribution: Uniform, Gaussian, Poisson, Gamma, Cauchy (Lorentz), Exponential and Jeffreys.

#### Revision 382010-09-28 - JaimeSaiz

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 12 to 12

#### Navigator view

Changed:
<
<
• Files ending with extension ".csv" are recognized as tables, and opened as such with double click.
>
>
Files ending with extension ".csv" are recognized as tables, and opened as such with double click.

#### Editors & Viewers

Changed:
<
<
• The small level-2 preview shown in the top-right corner of the Observation Context viewer can be enlarged by just clicking on it.
>
>
The small level-2 preview shown in the top-right corner of the Observation Context viewer can be enlarged by just clicking on it.

#### Startup & Shutdown

Changed:
<
<
• If the running Java platform is not supported, a warning is popped up.
>
>
If the running Java platform is not supported, a warning is popped up.

#### Look & Feel

Changed:
<
<
• Aqua look & feel has been replaced in Mac OS X by the HIPE look & feel that is used among all platforms.
>
>
Aqua look & feel has been replaced in Mac OS X by the HIPE look & feel that is used among all platforms.

#### Plug-ins

HIPE now supports plug-ins, with are small packages that anyone can easily create and distribute to share code (Java or Jython) and data (LocalStores). Plug-ins can be downloaded and installed with a single-click.

>
>

#### Miscellanea

• For writing a variable's name in the Jython editor or the Console, just drag & drop it there from the Variables view.
• Drag & drop selected text from a Jython editor to the Console or vice-versa copy & paste that text.

### Plotting

>
>

• Title and label can accept LaTeX commands \textrm \textit \textbf \mathrm \mathit \mathbf. for example, V$_{\textrm{LSR}}$
>
>

#### Dataset viewer

Line: 141 to 148

• HsaReadPool/HsaXmlPool can work with compressed data.
>
>

#### Preferences

Product storages and pools can be managed in the new Data Access > Storages & Pools preferences panel.

• Updated documentation:

#### Revision 372010-09-24 - PasqualePanuzzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 384 to 384

### Photometer Pipeline

• Pipeline scripts:
Changed:
<
<
>
>

• Comment out optical and electrical crosstalk corrections
• Removed plotting blocks

#### Revision 362010-09-24 - ThanosTsounis

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 198 to 198

### Installer

>
>
There was a major restructuring of the pre-installation steps
• The Basic/Advance selection page has been removed.
• The memory, proxy and versant settings were restructured. There are no separate panels asking if the user wants to set a proxy or a versant. There is a dedicated page for the proxy setting and one for the versant settings. In the top of the panel there is the question with a check box. Then there are the text fields not editable by default which will become editable upon user action on the above check box.
• Instead of the old instrument selection page, the user will now be offered the following list with check boxes for selection:  Option Description PACS (preselected by default) PACS pipelines and analysis tools for astronomers. PACS expert Extra instrument-related applications for Calibration Scientists. SPIRE (preselected by default) SPIRE pipelines and analysis tools for astronomers. SPIRE expert Extra instrument-related applications for Calibration Scientists. HIFI (preselected by default) HIFI pipelines and analysis tools for astronomers. HIFI expert Extra instrument-related applications for Calibration Scientists.

• The instrument selection window should allow to click in any combination of items to install those components.
• It should also allow the deselection of all instruments to get HIPE framework only for FITS i/o and numerics analysis.
• If possible, the installer should inform the user of the amount of data to download for the selected combination of modules.
• The Proxy selection page should contain the Yes/No button and the entry fields, which are kept in grey until "Yes" is selected. The default is kept to "No".
• The Versant selection page should contain the Yes/No button and the entry fields, which are kept in grey until "Yes" is selected. The default is kept to "No".
• The rest of the pages should stay as they are.

### Documentation

#### Revision 352010-09-21 - PeterKennedy

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 371 to 371

### Spectrometer Pipeline

>
>
• Added NaiveProjectionTask, a new task for creating spectral simple cubes from preprocessed spectral data. This task creates spectral cubes by averaging the flux of samples within each pixel. Pixels without samples are given a value of NaN.

### Interactive Analysis and Tools

• Added the new DTMosaic class that allows the user to plot data recorded by many detectors during one observation on a single page to compare data more effectively (mosaic plot). This features is available from HIPE command line or within DetectorTimelineExplorer

#### Revision 342010-09-17 - JaimeSaiz

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 22 to 22

• If the running Java platform is not supported, a warning is popped up.
Changed:
<
<

>
>

#### Look & Feel

Changed:
<
<
HIPE now supports plug-ins, with are small packages that anyone can easily create and distribute to share code (Java or Jython) and data (LocalStores). Plug-ins can be downloaded and installed with a single-click.
>
>
• Aqua look & feel has been replaced in Mac OS X by the HIPE look & feel that is used among all platforms.

Changed:
<
<

>
>

#### Plug-ins

Changed:
<
<
A new view has been added to HIPE for easy access to the Calibration Sources Database (Calsdb).
>
>
HIPE now supports plug-ins, with are small packages that anyone can easily create and distribute to share code (Java or Jython) and data (LocalStores). Plug-ins can be downloaded and installed with a single-click.

### Plotting

• Title and label can accept LaTeX commands \textrm \textit \textbf \mathrm \mathit \mathbf. for example, V$_{\textrm{LSR}}$
Line: 113 to 113

### Calibration sources

>
>
A new view has been added to HIPE for easy access to the Calibration Sources Database (Calsdb).

### Products and datasets

• Product comparison API is available in ia_toolbox_util module.

#### Revision 332010-09-17 - JavierDiaz

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 147 to 147

• Standarized _ doc _ of general tasks (signature, description, parameter descriptions)
• Examples of general tasks in the URM are now tested automatically
Changed:
<
<
• Compress and Decompress tasks: they support zip, tar, gzip, tgz in a portable way and compress can guess the compression of a file.
>
>
• Compress and Decompress tasks: they support zip, tar, gzip, tgz in a portable way and decompress can guess the compression of a file.

• FitsReader supports compressed FITS files.

### Quality control

#### Revision 322010-09-17 - JaimeSaiz

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 10 to 10

### HIPE

>
>

#### Navigator view

• Files ending with extension ".csv" are recognized as tables, and opened as such with double click.

#### Editors & Viewers

• The small level-2 preview shown in the top-right corner of the Observation Context viewer can be enlarged by just clicking on it.

#### Revision 312010-09-16 - JaimeSaiz

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 10 to 10

### HIPE

>
>

#### Editors & Viewers

• The small level-2 preview shown in the top-right corner of the Observation Context viewer can be enlarged by just clicking on it.

#### Startup & Shutdown

• If the running Java platform is not supported, a warning is popped up.

#### Revision 302010-09-16 - JuanCarlosSegovia

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 107 to 107

### Products and datasets

>
>
• Product comparison API is available in ia_toolbox_util module.

#### Observation context

• Include new metadata "slewTime" returning the scheduled start time of the slew as a FineTime

#### Revision 292010-09-16 - JavierDiaz

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 29 to 29

### Astronomical utilities

>
>
• RadialVelocity now uses TimeCorrProduct to select pointing data
• SSo now uses TimeCorrProduct to select pointing data
• Improved documentation

Line: 83 to 86

### Herschel Science Archive

>
>
• Support for exporting data in packed HSA format.
• Import and Export Views improvements:
• better error reporting
• file dialogs can show hidden files
• versions of observations inside pools shown

#### Pipeline processing

• Crated a daemon dispatcher mechanism.
• Aliases set tool has been modified for performing the required verifications before a tag is ingested.
Line: 121 to 130

>
>
• Updated documentation:
• wiki chapters
• Standarized _ doc _ of general tasks (signature, description, parameter descriptions)
• Examples of general tasks in the URM are now tested automatically
• Compress and Decompress tasks: they support zip, tar, gzip, tgz in a portable way and compress can guess the compression of a file.
• FitsReader supports compressed FITS files.

### Quality control

Line: 146 to 164

• On-demand request are now recorded into a report file

### Data input-output

>
>
• Imporved error reporting in AsciiTableTool

• FitsArchive
• ESO Hierarch keyword implemented when reading FITS files.
Line: 158 to 177

 slewTime SLEWTIME proCaveats PCAVEATS
• FitsArchive allow flag for compression when saving FITS files.
>
>

• JExamples automatic testing support.

#### Revision 282010-09-16 - JaimeSaiz

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 10 to 10

### HIPE

>
>

#### Startup & Shutdown

• If the running Java platform is not supported, a warning is popped up.

#### Plug-ins

HIPE now supports plug-ins, with are small packages that anyone can easily create and distribute to share code (Java or Jython) and data (LocalStores). Plug-ins can be downloaded and installed with a single-click.

#### View to access Calibration Sources Database

Changed:
<
<
A new view has been to added to HIPE for easy access to the Calibration Sources Database (Calsdb).
>
>
A new view has been added to HIPE for easy access to the Calibration Sources Database (Calsdb).

### Plotting

* Title and label can accept LaTeX commands \textrm \textit \textbf \mathrm \mathit \mathbf. for example, V$_{\textrm{LSR}}$

#### Revision 272010-09-16 - JuanCarlosSegovia

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 36 to 36

#### Random Numbers

• New random numbers generators from different distribution: Uniform, Gaussian, Poisson, Gamma, Cauchy (Lorentz), Exponential and Jeffreys.

#### Statistics functions

>
>
• RMS has been renamed to QRMS
• RMS implements a new functionality (see URM)
• Improved StdDev and Variance algorithms.
• Improved CorrelateMatrix algorithm.

##### New functions
• GeoMean which calculates the geometric mean of a array of numeric data types with 1 to 5 dimensions.
• Mode which returns the mode(s), or the most common element(s), of an array of numeric data with 1 to 5 dimensions.
Line: 45 to 50

>
>

#### Other functions

• SigClip
• Median mode uses Median Absolute Deviation instead of Standard deviation.
• Iterative use is allowed.

### Source extraction

• No significant changes to functionality.
Line: 70 to 79

### Herschel Science Archive

>
>

#### Pipeline processing

• Crated a daemon dispatcher mechanism.
• Aliases set tool has been modified for performing the required verifications before a tag is ingested.
• HsaPoolDaemon
• releases memory calling Java garbage collector if it is needed.
• can write compressed files.
• can save a binary representation of a product if the FITS save operation fails.
• HsaStagePool can export products into a LocalStore.
• HSA ingestion procedure can generate an XML ingestion request file even if a previous version does not contain its own XML.
• Improved test-harnesses to include an HAIO simulated server framework.

### Calibration sources

Line: 93 to 112
Several bugfixes to improve the effectiveness of caching and the robustness has been introduced. One of these is a check to verify that the default LocalStore directory is not modified at any time during the cache's existence, which is a common source of corruption of the cache.
>
>

#### HsaPool

• HsaReadPool/HsaXmlPool can work with compressed data.

### Quality control

Line: 119 to 142

• On-demand request are now recorded into a report file

### Data input-output

>
>
• FitsArchive
• ESO Hierarch keyword implemented when reading FITS files.
• FITS translation dictionary updated:  Herschel keyword FITS keyword pmRA PMRA pmDEC PMDEC state STATUS action ACTION slewTime SLEWTIME proCaveats PCAVEATS
• FitsArchive allow flag for compression when saving FITS files.
• JExamples automatic testing support.

### Virtual Observatory

#### Revision 262010-09-16 - JoseOsinde

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 77 to 77

#### Observation context

>
>
• Include new metadata "slewTime" returning the scheduled start time of the slew as a FineTime
• Specific accessors, getSlewStartTime() and setSlewStartTime(), where added to the ObservationContext class
• For old observations in the hsa without this value, the method will return a null value indicating that this field was never set before

#### History

A new history dataset viewer is available: When you click on the History dataset in your product then two tables appear above another:

#### Revision 252010-09-15 - AnthonySmith

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 47 to 47

### Source extraction

>
>
• No significant changes to functionality.

### Images

#### Revision 242010-09-15 - JoseOsinde

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 92 to 92

### Quality control

>
>
• New metadata into the QualityContext product. The field is fixed and the main interest is to include this information into the FITs file associated to the product.

FITS keyword Value
PCAVEATS Please refer to http://herschel.esac.esa.int/DpKnownIssues.shtml for known problems in products

• Perform bulk actions on several qc reports simultaneously
• Flags color codes depending on their importance

### Systematic product generation

• New framework to process/combine data from several observations in the same pipeline
• This will allow, for instances, better results using MADmap algorithm with cross-scan data from two or more observations
>
>
• Automatic processing:
• New start-time algorithm based on the DTCP time of the OD being processed instead of fixed timestamps
• New check on TM data based on the gap checker reports. Only those observations with complete tm data will be processed at this point

• Uplink plugin is executed without problems in different conditions, even for manual commanding and no uplink data at all.
Deleted:
<
<
• New start-time algorithm for automatic processing based on the DTCP time of the OD being processed instead of fixed timestamps
• SPG stand-alone application can now run on MAC O.S. with no versant libraries available.
• Include proper motion data into the ObservationContext

• Obsids shown also in decimal format in all the application tables
>
>
• Include proper motion data into the ObservationContext
• SPG stand-alone application can now run on MAC O.S. with no versant libraries available.
• On-demand request are now recorded into a report file

### Data input-output

#### Revision 232010-09-15 - JoseOsinde

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 94 to 94

### Systematic product generation

>
>
• New framework to process/combine data from several observations in the same pipeline
• This will allow, for instances, better results using MADmap algorithm with cross-scan data from two or more observations
• Uplink plugin is executed without problems in different conditions, even for manual commanding and no uplink data at all.
• New start-time algorithm for automatic processing based on the DTCP time of the OD being processed instead of fixed timestamps
• SPG stand-alone application can now run on MAC O.S. with no versant libraries available.
• Include proper motion data into the ObservationContext
• Obsids shown also in decimal format in all the application tables

### Virtual Observatory

#### Revision 222010-09-15 - PaulBalm

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 10 to 10

### HIPE

>
>

#### Plug-ins

HIPE now supports plug-ins, with are small packages that anyone can easily create and distribute to share code (Java or Jython) and data (LocalStores). Plug-ins can be downloaded and installed with a single-click.

#### View to access Calibration Sources Database

A new view has been to added to HIPE for easy access to the Calibration Sources Database (Calsdb).

### Plotting

Changed:
<
<
* Title and label can accept LaTeX commands \textrm \textit \textbf \mathrm \mathit \mathbf. for example, V$_{\textrm{LSR}}$
>
>
* Title and label can accept LaTeX commands \textrm \textit \textbf \mathrm \mathit \mathbf. for example, V$_{\textrm{LSR}}$

Line: 76 to 84

### Product Access Layer

>
>

#### Cache

Several bugfixes to improve the effectiveness of caching and the robustness has been introduced. One of these is a check to verify that the default LocalStore directory is not modified at any time during the cache's existence, which is a common source of corruption of the cache.

Line: 90 to 102

### Documentation

>
>
To improve the quality of the examples, we have introduced automatic testing of (many of) the source code examples occurring in manuals such as the Data Analysis Guide and the HIPE Owner's Guide. We have also introduced automatic testing of the examples occurring in the User's Reference Manual.

## HIFI

#### Revision 212010-09-14 - PeterKennedy

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 266 to 266

• Improved the color scale (using the Color&Mask Preferences it's now possible to select the Min/Max value fot the color scale)
• Improved the mask visualization (using the Color&Mask Preferences it's now possible to visualize any specific mask value directly on the array display)
Changed:
<
<
>
>
• Made available the Mosaic class which creates a mosaic of plots in the shape of the SLW, SSW or coaligned detectors of the SPIRE FTS. The Mosaic class is intended to provide a means for viewing (at a glance) the spectra or interferograms associated with each detector.
• Changed SpecExplorer's detector display so that it automatically resizes to fit the enclosing frame. Also, SpecExplorer's detectors are now enclosed in a splitter pane. This enables you to maximize or hide the detector display with a single click.

### Documentation

#### Revision 202010-09-14 - JeroenDeJong

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 65 to 65

### Products and datasets

>
>

>
>

#### History

A new history dataset viewer is available: When you click on the History dataset in your product then two tables appear above another:

• An overview table which shows all the tasks used to generate the product. For each task, the name, execution time, build number and used calibration files are shown.
• When you click on a row in this overview table then a second table is shown with details for the selected task. This table contains the details of this task: For each parameter its simple value and some product information is shown (when available).

### Product Access Layer

Line: 193 to 201

• PacsScr:2964: new wavelength calibration applied in waveCalc task using the wavePolynomes cal file
• spectrometer trend analysis product for the calibration blocks:
• PacsScr:2777: calibration block trendAnalysis product added to the observation context
>
>
• Extra options to specDiffChop (note these are EXPERT options for the analysis of special observations!)
• PacsScr:2717: extra option 'extend' added which allows for other pairwise differencing schemes. These schemes will subtract more datapoints from each other than the standard scheme.
• PacsScr:2427: extra option 'chopNodScheme' which provides different scheme for determining which label is on-source and which is off-source for a given nodding position. Needed for some special test AORs.
• Different bands in a range scan are now stored in their own blocks in the block table. This means that it is now possible to slice SEDs per band (PacsScr:2963).
• Several fixes to specWaveRebin, etc. to reduce the amount of NaNs considerably in the rebinned data.
• SpecProject sets the flux to Jy.

### Calibration

Line: 206 to 222

• PacsSpr:2607 The RSRF calibration tables contain "NaN" which are then introduced into the signal by rsrfCal

### Analysis tools

>
>

>
>

#### Spectrometry

>
>
• Compatibility of PACS products with HCSS tools improved: One can now properly select data points and use the fitter tool on PACS frames and cubes.

### Product changes

#### Revision 192010-09-14 - GabrieleMainetti

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 240 to 240

### Interactive Analysis and Tools

>
>
• Added the new DTMosaic class that allows the user to plot data recorded by many detectors during one observation on a single page to compare data more effectively (mosaic plot). This features is available from HIPE command line or within DetectorTimelineExplorer

Changed:
<
<
>
>
• Added a new features that allows the creation of mosaic plot of the detectors via right-click on the desired array

• Improved the color scale (using the Color&Mask Preferences it's now possible to select the Min/Max value fot the color scale)
• Improved the mask visualization (using the Color&Mask Preferences it's now possible to visualize any specific mask value directly on the array display)

#### Revision 182010-09-13 - CateLiu

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 142 to 142

• Extended Madmap (using scan and cross scan) for interactive usage
• HIPE -> Menu -> pipeline -> PACS -> L2_scanMap.py
Changed:
<
<
Based on HCSS-9361, a prototype for the extended Madmap pipeline is now available in HIPE for interactive usage. The extended Madmap pipeline is designed to combine scans and cross-scans in order to produce optional map. Different from DP pipelines (which normally starts with one ObservationContext), this pipeline takes an obsList which is a list of ObservationContext.
>
>
Based on HCSS-9361, a prototype for the extended Madmap pipeline is now available in HIPE for interactive usage. The extended Madmap pipeline is designed to combine scans and cross-scans in order to produce optional map. Unlike DP pipelines (which normally starts with one ObservationContext), this pipeline takes an obsList (an ArrayList) which is a list of ObservationContext. The pipeline will run even there is only one obs in the obsList. Below is an example creating an obsList:
HIPE> obsList=ArrayList()

• New script for scan Map pipeline
• PacsSpr:2801 Proposal for a two-stage photometer pipeline with masked highpass filtering

#### Revision 172010-09-13 - CateLiu

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 138 to 138

#### Photometry

Changed:
<
<
>
>

• Extended Madmap (using scan and cross scan) for interactive usage
• HIPE -> Menu -> pipeline -> PACS -> L2_scanMap.py
>
>

Based on HCSS-9361, a prototype for the extended Madmap pipeline is now available in HIPE for interactive usage. The extended Madmap pipeline is designed to combine scans and cross-scans in order to produce optional map. Different from DP pipelines (which normally starts with one ObservationContext), this pipeline takes an obsList which is a list of ObservationContext.

• New script for scan Map pipeline
• PacsSpr:2801 Proposal for a two-stage photometer pipeline with masked highpass filtering
• Now THE standard processing script for scan maps

#### Revision 162010-09-13 - CateLiu

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

#### Revision 152010-09-13 - CateLiu

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 25 to 25

• The SpectrumFitter (commandline version) has methods to export the data as the input type and as ASCII.
• The SpectrumFitter (commandline version) has method that returns a jython script

>
>

#### Random Numbers

• New random numbers generators from different distribution: Uniform, Gaussian, Poisson, Gamma, Cauchy (Lorentz), Exponential and Jeffreys.

#### Statistics functions

##### New functions
• GeoMean which calculates the geometric mean of a array of numeric data types with 1 to 5 dimensions.

#### Revision 142010-09-13 - MichaelWetzstein

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 133 to 133
Other small changes:
• getCalTree(), getCalProduct() now understand the 'verbose=True' keyword and will print information on the location of the calibration products.
• getCalProduct() the third argument, 'version', is no longer mandatory, if not given, the last version of the calibration product will be returned.
Changed:
<
<
>
>

#### Photometry

Line: 148 to 148
more to guess Sigclip parameters, run the deglitching and check the quality afterwards. The new option allows to find the best parameter quickly BEFORE deglitching has been applied.
The MapIndexViewer now also displays the signal vectors in the "timeordered" mode.
Changed:
<
<
>
>
• PacsSpr:2921: the MapIndexViewer shows mean/median +/- error permanently in the signal plot
• PacsSpr:2807: the Full MapIndex needs less memory than before
• PacsSpr:2859: Wcs4mapTask got a crota option to manually set the requested rotation angle of a map.
• PacsSpr:2925: CorrectRaDec4SsoTask is now also accepting the new Horizons class definition. An example how to use it can be found in the attached
• PacsSpr:2751 : photProject error map has been checked for NaN
• PacsSpr:2543 : exposure map has been removed in favour of the coverage map

• Noise treatmement
• PacsSpr:2752: A new modul herschel.pacs.spg.phot.PhotAddNoisePerPixelTask provides 4 ways to calculate the initial photometer noise. *Noise propagation is also implemented in the HighpassFilter, Mean- and MedianFilters.

#### Revision 132010-09-13 - JuergenSchreiber

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 172 to 172

#### Spectrometry

>
>
• new AOR mode "unchopped" including improved spatial calibration:

• First draft of the unchopped mode pipeline added to the build
• PacsScr:2779: a "newstyle" unchopped mode pipeline is in place which can be run automatically or interactively
• PacsScr:1048 New task specSubtractOffPosition implemented for unchopped pipeline
>
>

>
>
• improved wavelength calibration:

• PacsScr:2964: new wavelength calibration applied in waveCalc task using the wavePolynomes cal file
>
>
• spectrometer trend analysis product for the calibration blocks:

• PacsScr:2777: calibration block trendAnalysis product added to the observation context

### Calibration

#### Revision 122010-09-13 - GabrieleMainetti

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 225 to 225

### Interactive Analysis and Tools

>
>
• DetectorTimelineExplorer and DetectorTimelineExplorerComponent :
• Improved the color scale (using the Color&Mask Preferences it's now possible to select the Min/Max value fot the color scale)
• Improved the mask visualization (using the Color&Mask Preferences it's now possible to visualize any specific mask value directly on the array display)

### Documentation

#### Revision 112010-09-13 - JuergenSchreiber

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 176 to 176

>
>
• PacsScr:2964: new wavelength calibration applied in waveCalc task using the wavePolynomes cal file
• PacsScr:2777: calibration block trendAnalysis product added to the observation context

### Calibration

#### Revision 102010-09-13 - EkkehardWieprecht

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 116 to 116

## PACS

### Pipeline

>
>
• PACS "New Style Sliced" pipeline implementation is now activated
• PacsSpr:2647 : phot and spec ipipe script names are changed to be more logic and intuitive
• Pipeline Script access
• HIPE -> Menu -> pipeline -> PACS
• Calibration framework Calibration products are no longer delivered with the build in a local store.
Calibration products are now delivered as a directory of FITS files.
This directory with calibration products can be found in the data/pcal sub-directory of your installation directory.
HIPE> fm = getCalTree(verbose=1)
The calibration framework is adapted and will read these FITS files by default.
The getCalTree() command and all access to calibration data has not changed, under the hood, the local store has been replaced by the directory of FITS files. Other small changes:
• getCalTree(), getCalProduct() now understand the 'verbose=True' keyword and will print information on the location of the calibration products.
• getCalProduct() the third argument, 'version', is no longer mandatory, if not given, the last version of the calibration product will be returned.

#### Photometry

>
>
• Extended Madmap (using scan and cross scan) for interactive usage
• HIPE -> Menu -> pipeline -> PACS -> L2_scanMap.py
• New script for scan Map pipeline
• PacsSpr:2801 Proposal for a two-stage photometer pipeline with masked highpass filtering
• Now THE standard processing script for scan maps
• Photometer Mapping
• PacsSpr:2853: Photometer mapping accepts a variable input pixelsize (parameter pixfrac in the PhotProjectTask and the MapIndexTask).
• PacsSpr:2789: The MapIndexViewer has a Sigclip gui to display the effect of different Sigclip parameters on the second level deglitching. Now it is not necessary any more to guess Sigclip parameters, run the deglitching and check the quality afterwards. The new option allows to find the best parameter quickly BEFORE deglitching has been applied.
The MapIndexViewer now also displays the signal vectors in the "timeordered" mode.
• PacsSpr:2859: Wcs4mapTask got a crota option to manually set the requested rotation angle of a map.
• PacsSpr:2925: CorrectRaDec4SsoTask is now also accepting the new Horizons class definition. An example how to use it can be found in the attached
• PacsSpr:2751 : photProject error map not useable
• PacsSpr:2543 : Clarify mapping exposure vs coverage
• PacsSpr:2751 : photProject error map not useable
• Noise treatmement
• PacsSpr:2752: A new modul herschel.pacs.spg.phot.PhotAddNoisePerPixelTask provides 4 ways to calculate the initial photometer noise. *Noise propagation is also implemented in the HighpassFilter, Mean- and MedianFilters.
• Pointing
• Others
• PacsSpr:2761 PACS EDP: phot pipeline adaptation to cope with variable scan velocity
• framesOut = photMaskFrames(framesIn [,beforeFirstScanLeg] [,noScanData] [,afterCalblock=0] )
• beforeFirstScanLeg : Mask data befor the first scan leg
• noScanData : mask data where the ScanBBID is not set (includes turn arounds)
• afterCalblock : Mask n data after calibration block
• HcssSpr:6681: Sigclip can be applied n-times in one go.

#### Spectrometry

>
>
• First draft of the unchopped mode pipeline added to the build
• PacsScr:2779: a "newstyle" unchopped mode pipeline is in place which can be run automatically or interactively
• PacsScr:1048 New task specSubtractOffPosition implemented for unchopped pipeline
• PACS Product interface to SpectrumExplorer ( e.g. PacsSpr:2843 )

### Calibration

>
>

>
>

#### Spectrometry

>
>
• PacsSpr:2488 : New Wavelength Calibration Product
• PacsSpr:2855 v8 of the Pacs Spectrometer Array to Intrument and v4 of the Module2Array cal file is inserted in the system. This generates correct values also for center chopper positions (unchopped and waveswitch mode).
• PacsSpr:2715 : updated spectrometer spatial cal file --> PCalSpectrometer_ArrayInstrument_FM_v6.fits
• PacsSpr:2607 The RSRF calibration tables contain "NaN" which are then introduced into the signal by rsrfCal

### Analysis tools

#### Revision 92010-09-10 - YiMei

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 25 to 25

• The SpectrumFitter (commandline version) has methods to export the data as the input type and as ASCII.
• The SpectrumFitter (commandline version) has method that returns a jython script

>
>

#### Statistics functions

##### New functions
• GeoMean which calculates the geometric mean of a array of numeric data types with 1 to 5 dimensions.
• Mode which returns the mode(s), or the most common element(s), of an array of numeric data with 1 to 5 dimensions.
• Covariance which yields the covariance between two random variables/vectors x and y with finite second moments. If one vector is longer than the other, only the values up to the length of the shorter vector will be taken into account.
• CovarianceMatrix which returns the covariance matrix of the input M x N matrix. The result is a N x N matrix with each i, j value equal to the covariance of the ith and jth columns of the original matrix.

#### Revision 82010-09-10 - SaraRegibo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 41 to 41

• Update of URM documentation
• Cropping an image by drawing a rectangle on it
>
>
• Correction of the calculation of the dimensions of a mosaic

### Spectra

#### Revision 72010-09-10 - WimDeMeester

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 33 to 33

### Images

#### Display

• Images can be opened as RgbImage directly from the Navigator in HIPE.
>
>
• Regular image files (jpg, gif, png, ...) are shown as preview in the outline when being clicked on in the navigator view of hipe.

• 2 images can be compared by setting the opacity of the image. This can be done using the setOpacity(float) method or using a slider in the Image Display.

#### Analysis

• Added the methods containsNorthCelestialPole and containsSouthCelestialPole on the Wcs.
Changed:
<
<
>
>
• Regridding an image on the grid of another image using RegridTask
• Update of URM documentation
• Cropping an image by drawing a rectangle on it

### Spectra

#### Revision 62010-09-10 - PasqualePanuzzo

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 133 to 133

### Common Pipeline

>
>
• Only minor changes in logs and documentation.

### Photometer Pipeline

>
>
• Pipeline scripts:
• Comment out optical and electrical crosstalk corrections
• Removed plotting blocks

### Spectrometer Pipeline

#### Revision 52010-09-09 - RoBaS

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 20 to 20

### Numeric routines

>
>

#### Revision 42010-07-20 - JingjingLi

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 11 to 11

### Plotting

>
>
* Title and label can accept LaTeX commands \textrm \textit \textbf \mathrm \mathit \mathbf. for example, V$_{\textrm{LSR}}$

#### Revision 32010-07-14 - WimDeMeester

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 30 to 30

• Images can be opened as RgbImage directly from the Navigator in HIPE.
• 2 images can be compared by setting the opacity of the image. This can be done using the setOpacity(float) method or using a slider in the Image Display.

#### Analysis

>
>
• Added the methods containsNorthCelestialPole and containsSouthCelestialPole on the Wcs.

### Spectra

#### Revision 22010-06-28 - WimDeMeester

Line: 1 to 1

 META TOPICPARENT name="HipeWhatsNew"

# What's New in HIPE 5.0

Line: 27 to 27

### Images

#### Display

>
>
• Images can be opened as RgbImage directly from the Navigator in HIPE.
• 2 images can be compared by setting the opacity of the image. This can be done using the setOpacity(float) method or using a slider in the Image Display.

### Spectra

#### Revision 12010-06-28 - DavideRizzo

Line: 1 to 1
>
>
 META TOPICPARENT name="HipeWhatsNew"

<--
-->