Difference: DpHipePlugins (66 vs. 67)

Revision 672013-02-05 - PaulBalm

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META TOPICPARENT name="DpHipe"
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SUPREME: Super Resolution Map-maker for extended emission

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Generic Utilities

 
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From the project homepage:
 
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SUPREME is a generic name for mapmakers for extended emission based on a realistic physical instrument model and regularized inversion. A first development has been performed by T. Rodet et al IEEE 2, 5 (2008) using a Bayesian framework for the infrared slit spectrograph on board the Spitzer Space Telescope. F. Orieux et al A&A 539, A38 (2012) have proposed the first super-resolution supervised Bayesian mapmaker for the SPIRE instrument of the Herschel observatory, tested for simulated and real data. The current version of SUPREME, developed by H. Ayasso et al (hal-00765929), is based on an unsupervised Bayesian approach with enhanced beam and offset models. B. Hasnoun, member of the Integrated Data And Operation Center at IAS (IDOC), has exported the original Matlab code to Java and prepared a HIPE plugin.
 
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SUPREME is an ambitious pluridisciplinary research projet for mapmaking where several research codes have been already developed. For instance, the estimate of hyperparameters and instrument parameters has been presented by F. Orieux et al A&A 549, A83 (2013). Moreover, Ayasso et al proposed an unsupervised mapmaker for point and extend sources mixture. Furthermore other improvements are expected in the future (1/f corrections, use for other instruments, …).
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Unit Conversion Tool

 
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A plug-in for HIPE has been made available as the following URL:
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The Unit Conversion Tool converts between various units of Flux (e.g., erg/s/cm2), Flux Density (e.g., Jy), Intensity (e.g. Jy/sr, K), Integrated Intensity (e.g., K km/s), and Surface Area (e.g. Steradians). Constants are converted via a GUI, and arrays (of type Double1d) are converted via the HIPE command line. All conversion formulae are derived within the help.
 
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http://www.ias.u-psud.fr/supreme/pluginhipe.php
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To install, select Plug-ins from the Tools menu. Click Install new and enter the following URL:
 
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https://nhscsci.ipac.caltech.edu/common/DPsoftware/UnitConversionTool/UnitConversionTool_0.11.jar
 
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HI-PI: HIFI useful scripts plug-in

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The tool will auto-update itself. The Unit Conversion Tool is provided by Steve Lord and Annie Hoac (NHSC).
 
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From the project page:
 
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We have collected scripts from various sources around the HIFI ICC that have proved useful to users when reducing their data. This useful software has been packaged up in the format of a HIPE plugin, which is easy to install and will auto-update when a new version of the plugin is available.
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PACS Calibration Products Plug-in

 
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The plug-in is available at this URL:
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This plugin is in beta testing, please use with care!
 
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https://nhscsci.ipac.caltech.edu/sc/index.php/Hifi/HIPI
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This plug-in loads the PACS Calibration Products from a web server and installs the files on your local system.
To install, select Plug-ins from the Tools menu. Click Install new and enter the following URL:
 
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    http://pacs.ster.kuleuven.be/pub/plugins/pacs_cal_plugin_0.5.jar
 
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Photometric and spectroscopic convolution

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The installation is automatic and will present you with a dialog to specify the local directory in which you want to install the calibration products.

Note that the plugin will update your calibration products only after restarting HIPE!

Included in this release:

  • automatically check for new versions of calibration products
  • user script that allows the user to start the update at any time during a HIPE session

Future releases will include:

  • automatically check for updates of the PACS Calibration Products Plug-in

Cosmology Plug-in

A HIPE plugin to perform common Cosmological calculations. Based on Dave Hogg's "Distance measures in Cosmology", and similar to Ned Wright's javascript Cosmology Calculator.

 
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Photometric convolution: Task and script to convolve images to a common PSF. To install, select Plug-ins from the Tools menu. Click Install new and enter the following URL:
 

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http://herschel.esac.esa.int/twiki/pub/Public/DpHipePlugins/ConvolvePhotometric_1.2.jar
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https://nhscsci.ipac.caltech.edu/common/DPsoftware/Cosmology/Cosmology_1.3.jar
 
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Spectroscopic convolution: Task and script to convolve PACS line flux maps to a common PSF.
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HerschelQuickLook Plug-in

Access the quick look data products from the Herschel Space Observatory, searching by target name, sky coordinates or observation identifier.

 To install, select Plug-ins from the Tools menu. Click Install new and enter the following URL:
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http://herschel.esac.esa.int/twiki/pub/Public/DpHipePlugins/ConvolveSpectroscopic_1.1.jar
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http://herschel.be/twiki/pub/Public/DpHipePlugins/HerschelQuickLook_1.8.jar
 
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ALERT! These plug-ins are not compatible with HIPE 9. They are compatible with HIPE 10 from build 1500 onwards.
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Restart HIPE, go to "Tools" menu and select "HerschelQuickLook"
 
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Documentation for the tasks and scripts. After installing a plug-in, you can find the corresponding script under the Tools menu in HIPE.
 
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Unit Conversion Tool

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Dataset Reader: Load very large products, by loading only designated datasets

 
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The Unit Conversion Tool converts between various units of Flux (e.g., erg/s/cm2), Flux Density (e.g., Jy), Intensity (e.g. Jy/sr, K), Integrated Intensity (e.g., K km/s), and Surface Area (e.g. Steradians). Constants are converted via a GUI, and arrays (of type Double1d) are converted via the HIPE command line. All conversion formulae are derived within the help.
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This plug-in provides functions that allow reading of individual datasets from Products from the HSA, without the need to read the entire product into memory.

The concrete example for which it was written, are PACS Level 1 Frames products. By not loading the noise cube, for a given amount of memory, one can load products twice as large. This plug-in can be used for any kind of product, but it provides a special function to the PACS Frames, which produces a Frames product that can be reprocessed, but that does not contain the noise cube.

 
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To install, select Plug-ins from the Tools menu. Click Install new and enter the following URL:
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Go to the plug-in page
 
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https://nhscsci.ipac.caltech.edu/common/DPsoftware/UnitConversionTool/UnitConversionTool_0.11.jar
 
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The tool will auto-update itself. The Unit Conversion Tool is provided by Steve Lord and Annie Hoac (NHSC).
 
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SPIRE Photometric Interactive Analysis (SPIA)

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Photometry

SPIA: SPIRE Photometric Interactive Analysis

  The SPIA package is a plug-in to facilitate artifact removal and map-making from SPIRE scan maps.
Line: 92 to 108
  The installation is automatic. See the SPIA home for more information and documentation. SPIA development is led by Bernhard Schulz (NHSC). Support is available via the NHSC Helpdesk.
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PACS Calibration Products Plug-in

 
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This plugin is in beta testing, please use with care!
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Photometric convolution

 
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This plug-in loads the PACS Calibration Products from a web server and installs the files on your local system.
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Task and script to convolve images to a common PSF.
 To install, select Plug-ins from the Tools menu. Click Install new and enter the following URL:
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http://pacs.ster.kuleuven.be/pub/plugins/pacs_cal_plugin_0.5.jar
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http://herschel.esac.esa.int/twiki/pub/Public/DpHipePlugins/ConvolvePhotometric_1.2.jar
 
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The installation is automatic and will present you with a dialog to specify the local directory in which you want to install the calibration products.

Note that the plugin will update your calibration products only after restarting HIPE!

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ALERT! This plug-in is not compatible with HIPE 9. They are compatible with HIPE 10 from build 1500 onwards.
 
Changed:
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Included in this release:
  • automatically check for new versions of calibration products
  • user script that allows the user to start the update at any time during a HIPE session

Future releases will include:

  • automatically check for updates of the PACS Calibration Products Plug-in
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Documentation for the tasks and scripts. After installing a plug-in, you can find the corresponding script under the Tools menu in HIPE.
 
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PACS Simple Aperture Photometry Plug-in

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PACS Simple Aperture Photometry Plug-in

 

This task performs simple aperture photometry on a set of SimpleImage. It compliments and uses the ‘annularSkyAperturePhotometryTask’ interactive photometry tool already available in HIPE with added functionality catering to science needs. It is used to perform aperture photometry of unblended sources on single or multiple PACS frame.

Line: 133 to 137
 The tool will auto-update itself.
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MUST Plug-in

The MUST plug-in allows you to connect to ESOC's MUST database and process the housekeeping parameters.

 
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Warning, important At the moment the MUST database can only be accessed within the ESA internal network_
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Spectroscopy

 
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Usage

After installation:
  • Restart HIPE
  • Go to menu Edit -> Preferences.
  • Select Must from the tree at the left of the pop-up window.
  • Modify the user and password information (if you do not know your user or password for MUST, please ask your MUST contact person)/
  • Click Apply.
  • Go to the menu Window -> Show View -> Must.
  • In the Must View, click the button Get Parameters.
  • Now you can plot the parameters you want.
 
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If you want to make your own script to modify the parameters:
  • Go to Workbench perspective
  • Load the default script(Go to the menu Tools->must_herschel_plugin-composite.py)
  • Modify this example script at your wish.
  • Run the script
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Spectroscopic convolution

 
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Install

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Task and script to convolve PACS line flux maps to a common PSF.
 To install, select Plug-ins from the Tools menu. Click Install new and enter the following URL:
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http://herschel.esac.esa.int/twiki/pub/Public/DpHipePlugins/must_herschel_plugin_0.4.jar
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http://herschel.esac.esa.int/twiki/pub/Public/DpHipePlugins/ConvolveSpectroscopic_1.1.jar
 
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CASSIS Plug-in

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ALERT! This plug-in is not compatible with HIPE 9. They are compatible with HIPE 10 from build 1500 onwards.

Documentation for the tasks and scripts. After installing a plug-in, you can find the corresponding script under the Tools menu in HIPE.

HI-PI: HIFI useful scripts plug-in

From the project page:

We have collected scripts from various sources around the HIFI ICC that have proved useful to users when reducing their data. This useful software has been packaged up in the format of a HIPE plugin, which is easy to install and will auto-update when a new version of the plugin is available.

The plug-in is available at this URL:

https://nhscsci.ipac.caltech.edu/sc/index.php/Hifi/HIPI

CASSIS Plug-in

  CASSIS is a spectral analysis tool-set containing:
  • Line Identification Tool
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ScanAmorphos Plug-in

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Map-making

SUPREME: Super Resolution Map-maker for extended emission

From the project homepage:

SUPREME is a generic name for mapmakers for extended emission based on a realistic physical instrument model and regularized inversion. A first development has been performed by T. Rodet et al IEEE 2, 5 (2008) using a Bayesian framework for the infrared slit spectrograph on board the Spitzer Space Telescope. F. Orieux et al A&A 539, A38 (2012) have proposed the first super-resolution supervised Bayesian mapmaker for the SPIRE instrument of the Herschel observatory, tested for simulated and real data. The current version of SUPREME, developed by H. Ayasso et al (hal-00765929), is based on an unsupervised Bayesian approach with enhanced beam and offset models. B. Hasnoun, member of the Integrated Data And Operation Center at IAS (IDOC), has exported the original Matlab code to Java and prepared a HIPE plugin.

SUPREME is an ambitious pluridisciplinary research projet for mapmaking where several research codes have been already developed. For instance, the estimate of hyperparameters and instrument parameters has been presented by F. Orieux et al A&A 549, A83 (2013). Moreover, Ayasso et al proposed an unsupervised mapmaker for point and extend sources mixture. Furthermore other improvements are expected in the future (1/f corrections, use for other instruments, …).

A plug-in for HIPE has been made available as the following URL:

http://www.ias.u-psud.fr/supreme/pluginhipe.php

ScanAmorphos Plug-in

 

The purpose of the scanamorphos plug-in is to read data from the scanamorphos program. Output from this program is not directly readable in HIPE, due to omissions in the WCS information. This plug-in provides a task called importScanAmorphos, which loads the data, fixes the WCS and produces a SimpleImage.

Go to the plug-in page

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Cosmology Plug-in

 
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A HIPE plugin to perform common Cosmological calculations. Based on Dave Hogg's "Distance measures in Cosmology", and similar to Ned Wright's javascript Cosmology Calculator.
 
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    https://nhscsci.ipac.caltech.edu/common/DPsoftware/Cosmology/Cosmology_1.3.jar
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Other/Engineering

 
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HerschelQuickLook Plug-in

 
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Access the quick look data products from the Herschel Space Observatory, searching by target name, sky coordinates or observation identifier.
 
Added:
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MUST Plug-in

The MUST plug-in allows you to connect to ESOC's MUST database and process the housekeeping parameters.

Warning, important At the moment the MUST database can only be accessed within the ESA internal network_

Usage

After installation:
  • Restart HIPE
  • Go to menu Edit -> Preferences.
  • Select Must from the tree at the left of the pop-up window.
  • Modify the user and password information (if you do not know your user or password for MUST, please ask your MUST contact person)/
  • Click Apply.
  • Go to the menu Window -> Show View -> Must.
  • In the Must View, click the button Get Parameters.
  • Now you can plot the parameters you want.

If you want to make your own script to modify the parameters:

  • Go to Workbench perspective
  • Load the default script(Go to the menu Tools->must_herschel_plugin-composite.py)
  • Modify this example script at your wish.
  • Run the script

Install

 To install, select Plug-ins from the Tools menu. Click Install new and enter the following URL:


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http://herschel.be/twiki/pub/Public/DpHipePlugins/HerschelQuickLook_1.8.jar
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http://herschel.esac.esa.int/twiki/pub/Public/DpHipePlugins/must_herschel_plugin_0.4.jar
 
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Restart HIPE, go to "Tools" menu and select "HerschelQuickLook"
 
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Demonstration Plug-in

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Demonstration Plug-in

  The demonstration plug-in is intended for plug-in developers. It shows some features of plug-in, such as including a license text, using a custom installer and custom configuration.
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META FILEATTACHMENT attr="" autoattached="1" comment="Photometry convolution script" date="1348563310" name="hipe_conv_phot_script.py.txt" path="hipe_conv_phot_script.py.txt" size="16189" user="Main.DavideRizzo" version="1"
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META FILEATTACHMENT attr="" autoattached="1" comment="Demonstration plug-in" date="1281966445" name="demo_1.0.jar" path="demo_1.0.jar" size="5981" user="Main.PaulBalm" version="1"
 
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META FILEATTACHMENT attr="h" autoattached="1" comment="MUST plug-in for HIPE" date="1287757179" name="must_herschel_plugin_0.2.jar" path="must_herschel_plugin_0.2.jar" size="752246" user="Main.JorgoBakker" version="1"
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META FILEATTACHMENT attr="" autoattached="1" comment="Photometry convolution plugin v1.2 -- include script" date="1348572980" name="ConvolvePhotometric_1.2.jar" path="ConvolvePhotometric_1.2.jar" size="8217" user="Main.PaulBalm" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="MUST plug-in for HIPE v0.3" date="1288356795" name="must_herschel_plugin_0.3.jar" path="must_herschel_plugin_0.3.jar" size="759485" user="Main.PaulBalm" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="Documentation for photometry and spectroscopy convolution plugins" date="1348563491" name="Documentation.pdf" path="Documentation.pdf" size="87082" user="Main.DavideRizzo" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="Photometry convolution plugin" date="1348563226" name="ConvolvePhotometric_1.0.jar" path="ConvolvePhotometric_1.0.jar" size="3916" user="Main.DavideRizzo" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="Spectroscopy convolution plugin" date="1348563406" name="ConvolveSpectroscopic_1.0.jar" path="ConvolveSpectroscopic_1.0.jar" size="4421" user="Main.DavideRizzo" version="1"
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META FILEATTACHMENT attr="" autoattached="1" comment="" date="1279880284" name="spia_0.6.1.jar" path="spia_0.6.1.jar" size="14829" user="Main.PaulBalm" version="2"
META FILEATTACHMENT attr="" autoattached="1" comment="Photometry convolution plugin version registry" date="1353939064" name="ConvolvePhotometric_registry.xml" path="ConvolvePhotometric_registry.xml" size="2036" user="Main.PaulBalm" version="3"
>
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META FILEATTACHMENT attr="" autoattached="1" comment="Photometry convolution plugin v1.1 -- add release notes, auto update" date="1348567715" name="ConvolvePhotometric_1.1.jar" path="ConvolvePhotometric_1.1.jar" size="4135" user="Main.PaulBalm" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="Spectroscopy convolution script" date="1348563445" name="hipe_conv_spec_script.py.txt" path="hipe_conv_spec_script.py.txt" size="10392" user="Main.DavideRizzo" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1279530168" name="spia_0.6.jar" path="spia_0.6.jar" size="14572" user="Main.PaulBalm" version="1"
Added:
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META FILEATTACHMENT attr="h" autoattached="1" comment="MUST plug-in for HIPE" date="1287757179" name="must_herschel_plugin_0.2.jar" path="must_herschel_plugin_0.2.jar" size="752246" user="Main.JorgoBakker" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="Spectroscopy convolution plugin v1.1 -- add release notes, auto update, include script" date="1348572602" name="ConvolveSpectroscopic_1.1.jar" path="ConvolveSpectroscopic_1.1.jar" size="8740" user="Main.PaulBalm" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="Demo plug-in v1.1 -- add source code for Installer" date="1284378805" name="demo_1.1.jar" path="demo_1.1.jar" size="6791" user="Main.PaulBalm" version="1"
Changed:
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META FILEATTACHMENT attr="" autoattached="1" comment="Update relative to 0.8: Fix icon" date="1282925832" name="spia_0.8.1.jar" path="spia_0.8.1.jar" size="45831" user="Main.PaulBalm" version="1"
>
>
META FILEATTACHMENT attr="" autoattached="1" comment="Photometry convolution script" date="1348563310" name="hipe_conv_phot_script.py.txt" path="hipe_conv_phot_script.py.txt" size="16189" user="Main.DavideRizzo" version="1"
 
META FILEATTACHMENT attr="h" autoattached="1" comment="Script for Google Analytics" date="1350656701" name="GoogleAnalytics.txt" path="GoogleAnalytics.txt" size="549" user="Main.DavideRizzo" version="1"
Deleted:
<
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META FILEATTACHMENT attr="" autoattached="1" comment="Photometry convolution plugin v1.1 -- add release notes, auto update" date="1348567715" name="ConvolvePhotometric_1.1.jar" path="ConvolvePhotometric_1.1.jar" size="4135" user="Main.PaulBalm" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1279180084" name="unitTestPlugin_1.0.jar" path="unitTestPlugin_1.0.jar" size="510" user="Main.PaulBalm" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="MUST plug-in for HIPE v0.4" date="1319713175" name="must_herschel_plugin_0.4.jar" path="must_herschel_plugin_0.4.jar" size="759981" user="Main.PaulBalm" version="2"
META FILEATTACHMENT attr="" autoattached="1" comment="Photometry convolution plugin v1.2 -- include script" date="1348572980" name="ConvolvePhotometric_1.2.jar" path="ConvolvePhotometric_1.2.jar" size="8217" user="Main.PaulBalm" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="HerschelQuickLook" date="1330702974" name="HerschelQuickLook_1.8.jar" path="HerschelQuickLook_1.8.jar" size="146382" user="Main.JuanCarlosSegovia" version="1"
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META FILEATTACHMENT attr="" autoattached="1" comment="" date="1346288568" name="units1.pdf" path="units1.pdf" size="38841" user="Main.SteveLord" version="1"
Deleted:
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META FILEATTACHMENT attr="" autoattached="1" comment="Spectroscopy convolution script" date="1348563445" name="hipe_conv_spec_script.py.txt" path="hipe_conv_spec_script.py.txt" size="10392" user="Main.DavideRizzo" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="MUST plug-in for HIPE v0.3" date="1288356795" name="must_herschel_plugin_0.3.jar" path="must_herschel_plugin_0.3.jar" size="759485" user="Main.PaulBalm" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="Update relative to 0.8: Fix icon" date="1282925462" name="spa_0.8.1.jar" path="spa_0.8.1.jar" size="45831" user="Main.PaulBalm" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="Version registry of MUST plug-in" date="1347292185" name="must_herschel_plugin_registry.xml" path="must_herschel_plugin_registry.xml" size="1470" user="Main.PaulBalm" version="3"
Changed:
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META FILEATTACHMENT attr="" autoattached="1" comment="Documentation for photometry and spectroscopy convolution plugins" date="1348563491" name="Documentation.pdf" path="Documentation.pdf" size="87082" user="Main.DavideRizzo" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="Demonstration plug-in" date="1281966445" name="demo_1.0.jar" path="demo_1.0.jar" size="5981" user="Main.PaulBalm" version="1"
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>
>
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1279180084" name="unitTestPlugin_1.0.jar" path="unitTestPlugin_1.0.jar" size="510" user="Main.PaulBalm" version="1"
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